fix(ena-submission): Parse get analysis process response better for single segment case, return partial results and submit projects with holdUntilDate

[anna-parker]

resolves #2895

preview URL: https://patch-create-assembly.loculus.org/

Summary

Note that chromosome accessions are the accessions of the nucleotides in each submitted segment, in PP we call this insdcAccession_{segment}.

1. Rename check_ena to get_ena_analysis_process, refactor so that get_chromsome_accessions is a separate sub-function of get_ena_analysis_process, and results are returned when either the gca accession OR the chromosome accessions are returned (in contrast to now only returning results when both are returned)
2. Add tests that get_chromsome_accessions works for single and multi-segmented viruses now that we know the expected response format for both. I added a test where I mock the response using a known response text for a 1-segment case and confirm this works,
3. Update assembly_table.results column response results as soon as gca or chromosome accessions are known, but only change from WAITING to SUBMITTED state when both are known. Do not update table when there are no results or results are the same as already in table.

This PR additionally modifies the project submission request to by default submit projects with a hold_until_date parameter which is set to the day of submission (as we anyways only submit data to ENA when it is OPEN we should make the project public).

Screenshot

Testing

Tested on preview by

• setting github link to [do not merge]: Loculus testing - add back cchf and ebola-zaire example pathoplexus/ena-submission#5
• connecting to the db using portforwarding and altering results to known erz accessions
• for the 2-segment case set to ERZ24784470, confirm this leads to state SUBMITTED:

17:36:33     INFO (  create_assembly.py: 513) - Assembly submission for accession LOC_000RBTK succeeded and accession returned!

• Sadly the erz accessions are private so I could not fully confirm this works for the single segment case
• I additionally test that when only the chromosome accession is returned the table (by editing out code to add in the gca accession) the table stays in state WAITING:

17:52:59     INFO (  create_assembly.py: 489) - Partial results of assembly submission for accession LOC_000RBTK returned!