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fix(ena-submission): Parse get analysis process response better for single segment case, return partial results and submit projects with holdUntilDate #2896

Merged
merged 20 commits into from
Sep 30, 2024
Merged

fix(ena-submission): Parse get analysis process response better for single segment case, return partial results and submit projects with holdUntilDate #2896

merged 20 commits into from
Sep 30, 2024

Commits on Sep 30, 2024

  1. Update to allow for receiving only gca or insdc accessions, fix case … 

    …for single segmented viruses
    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  2. add test

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  3. improve name

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  4. Explicitly set holdUntilDate

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  5. test

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  6. fix submission xml

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  7. 2.try

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  8. 3.try

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  9. Do not print results

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  10. Fix code

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  11. wupps

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  12. Better comparison

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  13. test

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  14. revert test

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  15. Add additional tests

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  16. fix slack notification error when entries too long in state waiting

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  17. rename results -> result

    @corneliusroemer
    corneliusroemer committed Sep 30, 2024
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  18. Fix get_segmnet_order

    @anna-parker @corneliusroemer
    anna-parker authored and corneliusroemer committed Sep 30, 2024
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  19. refactor

    @corneliusroemer
    corneliusroemer committed Sep 30, 2024
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  20. Update ena-submission/Snakefile

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    anna-parker authored Sep 30, 2024
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