forked from bioconda/bioconda-recipes
-
Notifications
You must be signed in to change notification settings - Fork 0
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
update fork #1
Merged
Merged
update fork #1
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Owner
julie-sullivan
commented
Oct 2, 2018
- I have read the guidelines for bioconda recipes.
- This PR adds a new recipe.
- This PR updates an existing recipe.
- This PR does something else (explain below).
* add thermoparser * fix test
* Only mark the public facing Python files as executable * Kodoja v0.0.7
* Add mccortex * Refactor meta.yaml * Refactor meta.yaml * Add libtool build dependency * Maybe autoconf is the right library * Fix build number * Also need automake * fix sed issue in Mac OS X * Remove unneeded LIBRARY_PATH in build.sh
* Add mccortex * Refactor meta.yaml * Refactor meta.yaml * Add libtool build dependency * Maybe autoconf is the right library * Fix build number * Also need automake * fix sed issue in Mac OS X * Remove unneeded LIBRARY_PATH in build.sh * Fix minor comments from #10860 * bumb build number
* Merge with upstream * Revert "Merge with upstream" This reverts commit 2de34c7. * add lightassembler * fix dependency * fixing zlib * fixing zlib * Added patch
* add bufet * add bufet.bin * add version nr
* update stream to 0.2.1 * update stream to 0.2.1
* Update PureCLIP to v1.1.2 * reset build number and add DOI
* Updated to snpiphy v0.2 * Removed fn in meta.yaml
* Add cortexpy and abeona * Add delegation meta.yaml * Add linter suggested "build: noarch" * Fix incorrect noarch specification * Add some info to the meta.yamls * Update meta.yaml * Update to cortexpy package that includes LICENSE file
Fixing dependency issues with numpy caused by wrong conda-forge compatibility declaration of numpy versions.
#10876) * pin_compatible does not pin API compatible versions of numpy. Pin to the version used for building to avoid problems. * Annoying that is sometimes but not always uses older numpy version.
* add comparems2 * fix compilation * fix mac
* Add package for scanpy.
* snakemake 5.2.3 * Add gitpython dependency. * reset build number * snakemake 5.2.4
* mac recipe and added bioperl * changing bill number * added no osx * adding new version * removed separate recipe for mac, dont need it * now running same recipe for mac and linux
* novasplice 0.0.4 * updated sha256
* Bump starfish to 0.0.19 * Update requirements
* Added recipe for RPF-count-CDS * Simplified requirements, fixed package name * Added noarch flag * Added skip for python3
* Pin two dependencies for abeona * Update build number
* This fails locally, due to building against numpy 1.9 and running against 1.15 * This work, though oddly it's built against 1.15.
* Update sequana version to 0.7.1 * remove sequana from blacklist
* Added reparation_blast * Changed version of blast * Update meta.yaml * Updated version of reparation_blast, adding version output * Update meta.yaml
kat 2.4.1 - add missing cycler dependency
* bumping HULK version * Update meta.yaml * Update meta.yaml
* Bump version * Added SC3 wrapper script package * style
* adding gatk and picard to build * adding tabix
* Added new recipes r-DGEclustering * Update meta.yaml * Update meta.yaml * Update meta.yaml * Update meta.yaml
* add bioconductor-rhdf5 * Update meta.yaml
* Add recipe for rapidnj v2.3.2 * Move test to meta.yaml * Putting test back in separate file * Putting test back into meta.yaml after build change * Revert "Putting test back into meta.yaml after build change" This reverts commit 44ab945. * Delete run_test.sh * fix test? * test the pure help * Update meta.yaml * new try
* update stream to 0.2.2 * update stream to 0.2.3 * update stream to 0.2.4 * update stream to 0.2.4 * update stream to 0.2.4
* Add biom-format 2.1.7 * Bad formatting * addressing @bgruening's comment
* Bump kneaddata * Fix sha256
* update stream to 0.2.2 * update stream to 0.2.3 * update stream to 0.2.4 * update stream to 0.2.4 * update stream to 0.2.4 * update stream to 0.2.5
* Update recipe for paml to include dat/
* updating FI version and increasing STAR version * increasing STAR version
* adding requests lib * adding requests lib version
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.