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update fork #1

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Oct 2, 2018
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2b5f80a
add thermoparser (#10859)
bgruening Sep 7, 2018
c2ae222
Kodoja v0.0.7 (#10861)
peterjc Sep 7, 2018
42e7e8d
Adds recipe for mccortex (#10860)
winni2k Sep 8, 2018
502ea13
Mccortexv2 (#10865)
winni2k Sep 8, 2018
dc5e091
add lightassembler (#10845)
MathiasHaudgaard Sep 8, 2018
60da73c
add Bufet (#10871)
MathiasHaudgaard Sep 8, 2018
d02e58d
update stream (#10870)
huidongchen Sep 8, 2018
4e5a083
Update PureCLIP to v1.1.2 (#10873)
Sep 8, 2018
d219823
Update SINA to 1.3.4 (#10867)
epruesse Sep 9, 2018
cf62aaa
Updated to snpiphy v0.2 (#10874)
bogemad Sep 9, 2018
e95c477
Add recipes for abeona and its dependencies (#10864)
winni2k Sep 9, 2018
1c7082d
Fixing dependency issues with numpy (#10875)
joachimwolff Sep 9, 2018
e128a5a
pin_compatible does not pin API compatible versions of numpy. Pin to …
dpryan79 Sep 9, 2018
8c6ea85
add comparems2 (#10877)
MathiasHaudgaard Sep 10, 2018
b22e92a
Add package for scanpy. (#10863)
roryk Sep 10, 2018
6a67509
Bump slicedimage to 0.0.6 (#10880)
joshmoore Sep 10, 2018
87f6fb6
snakemake 5.2.3 (#10884)
johanneskoester Sep 10, 2018
fbe905c
mac recipe and added bioperl (#10104)
mshakya Sep 10, 2018
aa18a95
novasplice 0.0.4 (#10887)
Sep 10, 2018
486bbe8
Update confindr to 0.4.0 (#10888)
lowandrew Sep 10, 2018
1ae7ffe
Added new tool: biopet-bamstats (#10857)
rhpvorderman Sep 10, 2018
f934b3b
Bump starfish to 0.0.19 (#10879)
joshmoore Sep 10, 2018
d12e08d
Move ARB activate scripts to library subpackage (#10889)
epruesse Sep 10, 2018
e40b79b
Pin two dependencies for abeona (#10890)
winni2k Sep 10, 2018
480cbb7
Rpf count cds (#10885)
eggzilla Sep 10, 2018
f290add
Update build number for abeona recipe (#10891)
winni2k Sep 10, 2018
9ac5098
Pybigwig pinning again (#10892)
dpryan79 Sep 10, 2018
1241931
remove sequana from blacklist to build 0.7.1 (#10886)
cokelaer Sep 11, 2018
3e9cd6f
Reparation_blast recipe (#10819)
RickGelhausen Sep 11, 2018
1e785ee
Update meta.yaml (#10894)
rspreafico Sep 11, 2018
602a144
Update roary to bioperl 1.7 (#10895)
tseemann Sep 11, 2018
a8cdfdc
release 0.5.2 of genomepy (#10897)
simonvh Sep 11, 2018
addb3f1
Unblacklist repeatmasker (#10900)
abretaud Sep 11, 2018
a352a53
bump nanopolish (#10901)
mmiladi Sep 11, 2018
54a59ac
Adding recipe for topas (#10898)
apeltzer Sep 11, 2018
2c6c131
pb-falcon/0.2.0 -- Add falcon_phase (#10905)
Sep 12, 2018
7908380
Update Jalview to version 2.10.5 (#10893)
PertuyF Sep 12, 2018
30b48dc
Reparation blast (#10896)
RickGelhausen Sep 12, 2018
ae1ffef
Trinity v2.8.4 (#10909)
brianjohnhaas Sep 12, 2018
c4b112f
Add bedtools dep (#10906)
Sep 12, 2018
28f0bef
pb-assembly - update pb-falcon-0.2.0 (#10911)
Sep 12, 2018
0304129
Rmblast: update to 2.6.0 (#10912)
abretaud Sep 12, 2018
3452b74
pb-assembly: rebuild (#10913)
Sep 12, 2018
7c61c62
Reparation blast v1.0.3 (#10910)
RickGelhausen Sep 12, 2018
8e55ef2
Update metaphlan2 to latest version (#10915)
bebatut Sep 12, 2018
9b1f3c6
MEME: update to 5.0.2 + compile with mpi support (#10914)
abretaud Sep 12, 2018
4d5f046
pb-assembly: needs bwa for falcon-phase (#10916)
Sep 12, 2018
7ac151d
Update Picard to 2.18.13 (#10917)
cbrueffer Sep 12, 2018
903374f
pb-assembly needs mummer4 (#10918)
Sep 12, 2018
b4bf6a8
pb-assembly: and actually rebuild (#10919)
Sep 12, 2018
3fd1f83
abyss 2.1.1 (#10921)
sjackman Sep 12, 2018
b680cb9
Fix bioconda-utils invocation in case of local circleci client usage.…
johanneskoester Sep 12, 2018
6fa2c65
Phame (#10923)
mshakya Sep 13, 2018
941fd91
Update picard to 2.18.14 (#10926)
Sep 13, 2018
2d31e73
add perl as runtime dependency (#10932)
bgruening Sep 13, 2018
3608ca7
Add perl-autodie (#10933)
druvus Sep 13, 2018
ff013a1
add simka (#10848)
MathiasHaudgaard Sep 13, 2018
887fda9
Update: bcbio, bcbio-vm; additional CWL file outputs (#10936)
chapmanb Sep 13, 2018
a98a88e
Bump starfish to 0.0.20 (#10934)
joshmoore Sep 13, 2018
2b84018
Fixing perl-inline and perl-inline-c (#10935)
druvus Sep 13, 2018
8b3eaa1
Add recipe for perl-snap (#10928)
npavlovikj Sep 13, 2018
4b5d94e
pb-falcon: Build falcon-phase with meson/ninja (#10941)
Sep 13, 2018
acc172f
Added shebang (#10940)
eggzilla Sep 13, 2018
824c84a
fix conda-build 3.14 (bioconda-utils 0.14.4) compat (#10957)
mbargull Sep 14, 2018
bdd0ffb
pbbam: see if circleci problem occurs for this too (#10946)
Sep 14, 2018
51d097d
update libseq to 1.9.5 (#10952)
molpopgen Sep 14, 2018
9a74372
New recipe: duphold for annotating structural variants (#10962)
chapmanb Sep 14, 2018
45fa3b1
Kodoja v0.0.8 (#10963)
peterjc Sep 14, 2018
e45e11f
Biobb io (#10964)
PauAndrio Sep 14, 2018
70cda71
Biobb common (#10960)
PauAndrio Sep 14, 2018
db3eb90
Test download-entities.pl script (#10965)
nsoranzo Sep 14, 2018
b65f651
Biobb md (#10966)
PauAndrio Sep 14, 2018
02a1c77
Alfred v0.1.12 (#10961)
tobiasrausch Sep 14, 2018
c9728f0
Bump starfish to 0.0.21 (#10956)
joshmoore Sep 14, 2018
6e47665
Itsxpress 1.7.1 (#10953)
arivers Sep 14, 2018
edf7340
Update pysam version (#10949)
kyleabeauchamp Sep 14, 2018
2c0e060
updated scvi to version 0.2.1 (#10927)
jeff-regier Sep 14, 2018
8699312
Bumped cnvkit version (#10811)
micknudsen Sep 14, 2018
7cb947a
add new pkg apt-probeset-summarize (#10823)
vandelj Sep 14, 2018
dbb6ed5
Add recipe for PopPUNK v1.1.2 (#10951)
johnlees Sep 14, 2018
48d7fe2
Add recipe for r-whopgenome (#10948)
npavlovikj Sep 14, 2018
70b3c70
pb-falcon: Trying to force an update in bioconda (#10945)
Sep 14, 2018
04872b4
clairvoyante imporve recipe to install conda native intervaltree and …
aquaskyline Sep 14, 2018
6a04713
change channel priority (#10924)
bgruening Sep 14, 2018
a0424a7
add msalign2 (#10878)
MathiasHaudgaard Sep 16, 2018
5b2431b
add gdc (#10881)
MathiasHaudgaard Sep 16, 2018
3a59179
Update r-swamp to 1.4.1. (#10973)
cbrueffer Sep 16, 2018
84f1a7a
Update eoulsan to v2.3 (#10970)
Sep 16, 2018
bfb8f5c
stacks version bump 2.2 (#10942)
bernt-matthias Sep 16, 2018
7274461
pb-falcon: Must bump ver for conda update to work (#10971)
Sep 16, 2018
f7ae495
Add recipe for DADI (#10929)
npavlovikj Sep 16, 2018
7b66a98
pb-assembly: Update pb-falcon (#10979)
Sep 17, 2018
365aa64
pb-assembly: Update pb-falcon (#10980)
Sep 17, 2018
e7087c0
pb-falcon=0.2.1 (#10981)
Sep 17, 2018
56f480a
pb-falon: htslib=1.7 (#10982)
Sep 17, 2018
8c871dc
update stream to 0.2.2 (#10983)
huidongchen Sep 17, 2018
10a0e69
pb-falcon: Stil trying to match htslib in pbalign (#10984)
Sep 17, 2018
055db7d
Adding recipe for Jannovar v0.26. (#10987)
holtgrewe Sep 17, 2018
71bdb0f
Update yara and build from source (#10986)
eseiler Sep 17, 2018
fa1973c
Update confindr to v0.4.1 (#10990)
lowandrew Sep 17, 2018
d0b5b9c
PacBio: fix pbbam recipe (#10988)
pb-dseifert Sep 17, 2018
bf6f829
pb-falcon-phase: 0.2.3 (#10989)
Sep 17, 2018
6a798f6
PacBio: Bump pbbam to 0.19.0 (#10991)
pb-dseifert Sep 17, 2018
014af26
pb-assembly: Try bumping only the build number (#10993)
Sep 17, 2018
df38233
pb-assembly: bump ver and req non-broken pb-falcon (#10994)
Sep 17, 2018
d1f97b5
PacBio: Rebuild revdeps of pbbam for 0.19.0 bump (#10992)
pb-dseifert Sep 18, 2018
0ca572d
Rnasketch update to version 1.5 (#10999)
j-4 Sep 18, 2018
e5ace6d
Bump slicedimage to 0.0.7 (#11002)
joshmoore Sep 18, 2018
ed5bc29
Fix mcl (#11003)
druvus Sep 18, 2018
e8a03a5
PacBio: Update `pbmm2` to version 0.9.0 (#11004)
armintoepfer Sep 18, 2018
fda8137
Update abeona to v0.23.1 (#10997)
Sep 18, 2018
8031c19
Cgat core (#10969)
sebastian-luna-valero Sep 18, 2018
92c5ea5
Update: duphold, octopus (#11001)
chapmanb Sep 18, 2018
2e7d90a
add recipe smeg (#10976)
aemiol Sep 18, 2018
57ac4f1
snakemake 5.3.0 (#11006)
johanneskoester Sep 18, 2018
ad716f5
PacBio: Rebuild revdeps of pbbam for 0.19.0 bump #2 (#11008)
pb-dseifert Sep 18, 2018
0c636e4
bump meme 4.11.2 to work with the new comiler system. (#11009)
zachcp Sep 18, 2018
c5e7f8e
Antismash42 (#9789)
zachcp Sep 18, 2018
7cb270a
update perl dependencies for roary (#11012)
aemiol Sep 18, 2018
28bcc19
update build number for smeg (#11015)
aemiol Sep 18, 2018
c9660e0
Add missing kallisto dependency (#11016)
winni2k Sep 19, 2018
cdfb429
Rebuild Roary (#11017)
druvus Sep 19, 2018
d1abb1b
added new features to reparartion_blast (#11010)
RickGelhausen Sep 19, 2018
2427b05
Updated ribotish to 0.2.1 (#11020)
eggzilla Sep 19, 2018
15ba11d
Bump perl-inline-c (#10939)
druvus Sep 19, 2018
e966ae8
Maker: add missing perl dependency (#10907)
abretaud Sep 19, 2018
60d01f8
PacBio: Update `lima` to version 1.8.0 (#11024)
armintoepfer Sep 19, 2018
2c7387d
Conda recipe for Beast2 version 2.5.0 (#10474)
slacalle Sep 19, 2018
703f73e
Add kraken2 (#10502)
dfornika Sep 19, 2018
7090cd9
Update ascat to v2.5.2 (#10998)
Sep 19, 2018
ca5bc4e
genenotebook v0.1.3 (#11028)
holmrenser Sep 19, 2018
4484aa9
PeptideShaker: updated version to 1.16.29 (#11019)
CarlosHorro Sep 19, 2018
9eef94b
Add recipe for Biolib (#11026)
npavlovikj Sep 19, 2018
0708264
Evidencemodeler new recipe (#10389)
nextgenusfs Sep 20, 2018
f3b108e
BLAST 2.7.1 using BOOST 1.67 (#11011)
epruesse Sep 20, 2018
34563c4
bowtie2 v2.3.4.3 (#11023)
peterjc Sep 20, 2018
ac5df2d
fixed bug in Ribo_seq_occupancy.py (#11034)
RickGelhausen Sep 20, 2018
8026799
Bump SINA to 1.3.5 (#11030)
epruesse Sep 20, 2018
f79f018
Add fastani (#11036)
druvus Sep 20, 2018
0fdae44
Slamdunk (#11037)
t-neumann Sep 20, 2018
b332578
Quote in case of spaces (#8222)
peterjc Sep 20, 2018
9e05113
Update: delly (boost fix); bcbio, bcbio-vm (CWL fixes) (#11035)
chapmanb Sep 20, 2018
b71db4c
Ectyper (#11043)
chadlaing Sep 20, 2018
31a7d27
Maker: precompile inline C code for MPI support (#11040)
abretaud Sep 20, 2018
f783fa9
Add recipe for r-blockfest, used conda_r_skeleton_helper (#11044)
npavlovikj Sep 20, 2018
95997ff
Add recipe for r-popgenome (#11045)
npavlovikj Sep 20, 2018
1bfcd9e
new build for smeg (#11047)
aemiol Sep 21, 2018
fbe3701
r-metstat (#11041)
lecorguille Sep 21, 2018
d3a2e8b
Bump cortexpy to 0.44.0 (#11051)
winni2k Sep 21, 2018
0a5f26c
Maker: mpi fix (#11053)
abretaud Sep 21, 2018
2af3dc0
Updated version (#11055)
ODiogoSilva Sep 21, 2018
af38533
metaxa (#11052)
bernt-matthias Sep 21, 2018
8c3a199
Bump abeona version to 0.24.0 (#11056)
winni2k Sep 22, 2018
4cfa55e
Update: gatk4 (4.0.9.0), vqsr_cnn (0.0.194), duphold (0.0.6) (#11057)
chapmanb Sep 22, 2018
ac61f19
Planemo18.09 (#11059)
bgruening Sep 23, 2018
88edf59
Cardinal update (#11061)
bgruening Sep 23, 2018
377e59c
Ectyper (#11054)
chadlaing Sep 23, 2018
32c5f7e
Updating nanopack tools (#11058)
wdecoster Sep 23, 2018
d8f05da
Update meta.yaml (#11060)
rfarouni Sep 23, 2018
6a599fc
Fix a few minor issues with the "Bootstrap" contribut method (#10668)
nh13 Sep 23, 2018
aee246d
Thermo update for Yasset (#11062)
bgruening Sep 24, 2018
3d564ae
Bump STAR to 2.6.1b (#11063)
dpryan79 Sep 24, 2018
c72bfbe
Weeder2 fix wrapper script (#11039)
pjbriggs Sep 24, 2018
81e125c
Removed noarch python (#10985)
micknudsen Sep 24, 2018
a8468b4
New recipe: truvari for structural variant validation (#11064)
chapmanb Sep 24, 2018
b37f9f2
Remove phylip and r2r from the blacklist (#11065)
dpryan79 Sep 24, 2018
1dee87d
Bioconductor singlecellexperiment scripts (#11067)
pinin4fjords Sep 24, 2018
a181769
Bump python-omero to 5.4.8 (#11070)
joshmoore Sep 24, 2018
502e396
Updated wtdbg to v2.0 (#11072)
lh3 Sep 24, 2018
38f413a
Maker: another MIP fix (#11069)
abretaud Sep 24, 2018
43af8d7
Wrong project name: changed wtdbg2 to wtdbg (#11076)
lh3 Sep 24, 2018
45861ab
Update orthofinder (#11066)
emilhaegglund Sep 24, 2018
adb1042
PacBio: Require at least numpy 1.15 (#11079)
pb-dseifert Sep 24, 2018
df7494f
Add recipe for Red 2015.05.22. (#11081)
acaprez Sep 24, 2018
bd76cc2
update stream to 0.2.3 (#11080)
huidongchen Sep 24, 2018
1c86cff
Update recipe for bpp-core (#11077)
npavlovikj Sep 25, 2018
dec2726
Add recipe for bpp-seq (#11084)
npavlovikj Sep 25, 2018
6c2a5f7
Add recipe for bpp-phyl (#11085)
npavlovikj Sep 25, 2018
cfccc73
Add recipe for bpp-popgen 2.4.1 (#11086)
npavlovikj Sep 25, 2018
c1bdd6d
Add recipe for perl-bundle-bioperl (#11087)
npavlovikj Sep 25, 2018
60e5dae
Bump slicedimage to 0.1.0 (#11088)
joshmoore Sep 25, 2018
4e7284a
Remove pybedtools and rsem/1.2.21 from the blacklist (#11082)
dpryan79 Sep 25, 2018
806d242
PacBio: Require at least numpy 1.15 (#11073)
pb-dseifert Sep 25, 2018
64278b3
PacBio: rebuild `bax2bam` for new pbbam (#11089)
pb-dseifert Sep 25, 2018
613bde5
sartools1.6.5 (#11093)
hvaret Sep 25, 2018
7acdab7
Remove various packages from the blacklist (#11091)
dpryan79 Sep 25, 2018
15a74a5
Mtbseq recipe (#11042)
cutpatel Sep 25, 2018
37bd672
Slimm (#11096)
temehi Sep 25, 2018
8acdbbc
Bioconductor scater scripts (#11095)
pinin4fjords Sep 25, 2018
80ae9da
Update recipe for tabix 0.2.6 (#11092)
davebx Sep 25, 2018
1f365bd
flye 2.3.6 (#11099)
mikolmogorov Sep 25, 2018
c8142ef
tag 3.2 (#11100)
davidechicco Sep 25, 2018
654b3d3
behst3.5 (#11101)
davidechicco Sep 25, 2018
e828a76
Update Selene to 0.1.2 (#11097)
kathyxchen Sep 26, 2018
716d7a9
Updating ctat mutation recipe to new version (#11104)
asmariyaz23 Sep 26, 2018
01c59a0
rebuild yara (#11105)
eseiler Sep 26, 2018
3ae074d
Plass Release 2-c7e35 (#11074)
martin-steinegger Sep 26, 2018
a2cd425
Bioconductor singlecellexperiment scripts (#11107)
pinin4fjords Sep 26, 2018
62c1dc4
Ctat mut (#11108)
asmariyaz23 Sep 26, 2018
d4208fd
update SeqKit to v0.9.0 (#11109)
shenwei356 Sep 26, 2018
09c5447
removed BEHST from the blacklist (#11111)
davidechicco Sep 26, 2018
840b888
New recipe for AdmixTools (#11112)
ryanraaum Sep 26, 2018
77b480c
pin to latest r-goes version which has a bug fix (#11115)
bgruening Sep 26, 2018
0089797
Ctat mut (#11118)
asmariyaz23 Sep 26, 2018
e45a9d6
Revert "Ctat mut (#11118)" (#11121)
asmariyaz23 Sep 26, 2018
db9b3f3
Add recipe for revtrans 1.4. (#11114)
acaprez Sep 26, 2018
93ed243
Ctat mut (#11122)
asmariyaz23 Sep 27, 2018
fab8895
Bump starfish to 0.0.23 (#11123)
joshmoore Sep 27, 2018
a4886c4
Update: vardict-java, vardict, bcbio, bcbio-vm (#11124)
chapmanb Sep 27, 2018
f27432e
edited version 3.6 (#11116)
davidechicco Sep 27, 2018
ff7a592
delly v0.7.9 (#11127)
tobiasrausch Sep 27, 2018
77be13d
behst3.7 (#11128)
davidechicco Sep 27, 2018
22456f4
Add lxml run requirement to planemo (#11126)
nsoranzo Sep 27, 2018
b4488aa
Updated flowcraft version to 1.3.1 (#11129)
ODiogoSilva Sep 27, 2018
05d1cd1
initial recipe for admixture 1.3.0 (#11119)
ryanraaum Sep 27, 2018
48f0a0d
nextflow 0.32.0 (#11125)
pditommaso Sep 27, 2018
772b629
Bcbiornaseq update (#11117)
roryk Sep 28, 2018
52dcaf5
Bracken 2.2 (#11094)
dfornika Sep 28, 2018
e081497
Rebuilding gimmemotifs (#11098)
druvus Sep 28, 2018
32175ed
adding gatk and picard to build (#11136)
asmariyaz23 Sep 28, 2018
bb3f0b0
Jannovar v0.27 (#11130)
holtgrewe Sep 28, 2018
275dcd1
re-blacklist r-bcbiornaseq related packages. (#11138)
roryk Sep 28, 2018
f5d6c0f
Update: deepvariant (0.7.0) (#11139)
chapmanb Sep 28, 2018
1e3bd81
bumping HULK version (#11137)
Sep 28, 2018
9ddff18
Bioconductor sc3 scripts (#11140)
pinin4fjords Sep 28, 2018
49a3088
Update yacrd to version 0.4 (#11142)
natir Sep 28, 2018
47e9281
Ctat mut (#11144)
asmariyaz23 Sep 28, 2018
c1530a5
update version to 0.5.2 (#11145)
AndreasHeger Sep 28, 2018
f353032
r-dgeclustering (#11143)
Sep 28, 2018
a2522bd
add bioconductor-rhdf5 (#11146)
bgruening Sep 28, 2018
350c476
Add recipe for rapidnj v2.3.2 (#10967)
johnlees Sep 28, 2018
0810572
update stream to 0.2.4 (#11149)
huidongchen Sep 29, 2018
1ada9cd
Remove fastdtw (#11151)
druvus Sep 29, 2018
e74db43
Add biom-format 2.1.7 (#11147)
wasade Sep 29, 2018
f405e3b
Bump kneaddata (#11152)
druvus Sep 29, 2018
116c007
update stream to 0.2.5 (#11154)
huidongchen Sep 30, 2018
3940452
Update recipe for paml (#11156)
npavlovikj Sep 30, 2018
700cc27
Update: sentieon (201808) (#11157)
chapmanb Sep 30, 2018
72463d2
Poppunk (#11158)
johnlees Oct 1, 2018
6078f59
Fusion insp (#11161)
asmariyaz23 Oct 1, 2018
70f53a9
Revert "Fusion insp (#11161)" (#11162)
asmariyaz23 Oct 1, 2018
3762909
Tracy v0.3.6 (#11160)
tobiasrausch Oct 1, 2018
3c45dbe
updating FI and STAR versions (#11164)
asmariyaz23 Oct 1, 2018
991319f
update module version to 2.97 (#11167)
fgiacomoni Oct 1, 2018
155a276
Added new version of reparation_blast (#11169)
RickGelhausen Oct 1, 2018
60f05c0
Fusion insp (#11171)
asmariyaz23 Oct 1, 2018
f17312b
Revert "Fusion insp (#11171)" (#11173)
asmariyaz23 Oct 1, 2018
3ce5f86
adding requests library (#11174)
asmariyaz23 Oct 1, 2018
b74e379
Msqrob (#11176)
bgruening Oct 2, 2018
547bcfc
updating star fusion and STAR (#11179)
asmariyaz23 Oct 2, 2018
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Bump slicedimage to 0.0.6 (bioconda#10880)
  • Loading branch information
joshmoore authored Sep 10, 2018
commit 6a675099ffccba6b3998d8343bf7976190712462
4 changes: 2 additions & 2 deletions recipes/slicedimage/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
{% set SLICEDIMAGE_VERSION = "0.0.5" %}
{% set SLICEDIMAGE_VERSION = "0.0.6" %}

package:
name: slicedimage
version: {{ SLICEDIMAGE_VERSION }}

source:
url: https://github.com/spacetx/slicedimage/archive/{{ SLICEDIMAGE_VERSION }}.zip
sha1: 39e59d017cb293f0796b55d5994f7902f7ba70bc
sha1: a2ef8fc16aaab69e36ee69db76ba6a9b1af49b85

build:
noarch: python
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