IHM Meeting Summary Mar 30 2017

IHM Meeting Summary Mar 30, 2017

Attended by BW, TG and BV

1. Dictionary and examples have been updated.

2. Github issues 26, 27 and 28 have been addressed and closed.

3. Issues 24 and 25: Ensembles can be separated from other files (starting models, input restraints, alignments, localization densities etc). This will help limit the size of the files and allow for easier access. Since the same DOI can refer to multiple zip archives, the ensembles can be a seperate zip archive within the same DOI. The ensemble zip archive can comprise of individual model files or a single multi-model file.

4. BV will update the dictionary.

   Add:

   • _ihm_starting_comparative_models.template_dataset_list_id
   • Integrative model to the enumerated list in _ihm_dataset_list.data_type.
   • Examples to illustrate a DOI leading to a single file.

   Remove:

   • _ihm_starting_comparative_models.template_db_name
   • _ihm_starting_comparative_models.template_db_code
   • _ihm_starting_model_details.starting_model_db_name
   • _ihm_starting_model_details.starting_model_db_code
   • _ihm_related_dataset.data_type_derived
   • _ihm_related_dataset.data_type_primary
   • _ihm_dataset_related_db_reference.data_type
   • _ihm_dataset_external_reference.data_type

5. BW will update the IMP examples to make them compliant with the updated dictionary as well as address some of the open issues. Missing information include links to sequence alignments, ensembles, starting comparative models and their templates and 2DEM position and scaling matrix.

6. BW will contact the PIs of the representation/validation sub-group to encourage their postdocs to attend the next large group meeting on April 6th at 11:00 AM EDT. We will present an overview of the I/H methods dictionary and the current IMP examples during the meeting.