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IHM Meeting Summary Dec 21 2017

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brindakv edited this page Dec 21, 2017 · 4 revisions

IHM Meeting Summary Dec 21, 2017

Attended by Ben Webb and Brinda Vallat

  1. The IHM dictionary paper has been submitted.

  2. The three structures published in the following paper could be deposited to PDB-Dev.

Zhu J, Luo BH, Barth P, Schonbrun J, Baker D, Springer TA. The structure of a receptor with two associating transmembrane domains on the cell surface: integrin alphaIIbbeta3. Mol Cell. 2009 Apr 24;34(2):234-49. doi: 10.1016/j.molcel.2009.02.022.

We require further information to clarify the following.

  • Is the experimental data available in any repository? If not, can they be put into zenodo to obtain a DOI? Using the DOI from the publication may not be appropriate because it will make the data inaccessible to software applications.
  • It is not clear which tables from the supplementary material are relevant.

  1. Support for Model Archive modeling dictionary: Juergen has requested examples with expanded modeling protocols with seperate steps for template selection, alignment, modeling and assessment. The ModBase examples provide this information. These examples need to be validated against the dictionary.

  2. The next meeting will be on Thursday, January 4th 2018, at 12:00 PM Eastern time.

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