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32 Open 36 Closed
32 Open 36 Closed
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Issues list

"Pseudo-Roots" and representing ancestral variation
#126 opened Jul 8, 2024 by hyanwong
Transposable element (TE) simulations
#121 opened Apr 18, 2024 by hyanwong
Inference from real data: useful references
#119 opened Mar 31, 2024 by hyanwong
2
Extracting haplotypes / DNA sequences
#113 opened Mar 21, 2024 by hyanwong
Finding "next most close" MRCAs
#111 opened Mar 21, 2024 by hyanwong
Documentation via JupyterBook (and tidy)
#106 opened Mar 15, 2024 by hyanwong
5
Choose breakpoints by rejection sampling
#102 opened Mar 7, 2024 by hyanwong
1
Backward simulations: a possible breakthrough?
#93 opened Mar 1, 2024 by hyanwong
1
Think about edge ordering for backward-time simulations
#92 opened Mar 1, 2024 by hyanwong
Move table validation into tables.py
#87 opened Feb 21, 2024 by hyanwong
Speed up forward simulations
#86 opened Feb 21, 2024 by hyanwong
4
Test fwd-sim code with duplications
#84 opened Feb 15, 2024 by hyanwong
How to *stop* weird crossovers
#83 opened Feb 15, 2024 by hyanwong
Ideas for visualisation tools
#78 opened Feb 15, 2024 by duncanMR
1
Efficient interval intersections
#71 opened Feb 10, 2024 by hyanwong
3
Storing (L, R) plus value for inverted
#65 opened Jan 22, 2024 by hyanwong
2
Implement a basic simplify()
#64 opened Jan 21, 2024 by hyanwong
2
Long-term API ideas: named accessors
#55 opened Jan 13, 2024 by hyanwong
Restricted simulation that can be simulated backwards and forwards
#54 opened Jan 11, 2024 by hyanwong
2
Get tsdate-like algorithms running on a GIG
#38 opened Nov 5, 2023 by hyanwong
Explore simulations without recombination for cancer genomes
#37 opened Nov 1, 2023 by hyanwong
Algorithm to find the tree for a point on the genome of a given sample
#35 opened Oct 17, 2023 by duncanMR
@duncanMR
5
Construct more GIG examples with combinations of SVs and recombination
#33 opened Oct 17, 2023 by duncanMR
@duncanMR
12
Use-case: whole genome duplication / polyploidy
#15 opened Sep 27, 2023 by hyanwong
2
Modelling the short arm acrocentric arms of human chromosomes
#12 opened Sep 21, 2023 by hyanwong
1
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