migrate code from googleapis/nodejs-life-sciences

.release-please-manifest.json

@@ -21,6 +21,7 @@
   "packages/google-cloud-gkeconnect-gateway": "2.0.5",
   "packages/google-cloud-gkemulticloud": "0.1.4",
   "packages/google-cloud-language": "5.1.2",
+  "packages/google-cloud-lifesciences": "2.1.2",
   "packages/google-cloud-memcache": "2.1.4",
   "packages/google-cloud-monitoring": "3.0.3",
   "packages/google-cloud-oslogin": "4.0.4",

packages/google-cloud-lifesciences/.OwlBot.yaml

@@ -0,0 +1,20 @@
+# Copyright 2021 Google LLC
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+deep-remove-regex:
+  - /owl-bot-staging
+
+deep-copy-regex:
+  - source: /google/cloud/lifesciences/(.*)/.*-nodejs
+    dest: /owl-bot-staging/google-cloud-lifesciences/$1

packages/google-cloud-lifesciences/.eslintignore

@@ -0,0 +1,7 @@
+**/node_modules
+**/coverage
+test/fixtures
+build/
+docs/
+protos/
+samples/generated/

packages/google-cloud-lifesciences/.eslintrc.json

@@ -0,0 +1,3 @@
+{
+  "extends": "./node_modules/gts"
+}

packages/google-cloud-lifesciences/.gitattributes

@@ -0,0 +1,4 @@
+*.ts text eol=lf
+*.js text eol=lf
+protos/* linguist-generated
+**/api-extractor.json  linguist-language=JSON-with-Comments

packages/google-cloud-lifesciences/.gitignore

@@ -0,0 +1,14 @@
+**/*.log
+**/node_modules
+.coverage
+coverage
+.nyc_output
+docs/
+out/
+build/
+system-test/secrets.js
+system-test/*key.json
+*.lock
+.DS_Store
+package-lock.json
+__pycache__

packages/google-cloud-lifesciences/.jsdoc.js

@@ -0,0 +1,55 @@
+// Copyright 2022 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//     https://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+//
+// ** This file is automatically generated by gapic-generator-typescript. **
+// ** https://github.com/googleapis/gapic-generator-typescript **
+// ** All changes to this file may be overwritten. **
+
+'use strict';
+
+module.exports = {
+  opts: {
+    readme: './README.md',
+    package: './package.json',
+    template: './node_modules/jsdoc-fresh',
+    recurse: true,
+    verbose: true,
+    destination: './docs/'
+  },
+  plugins: [
+    'plugins/markdown',
+    'jsdoc-region-tag'
+  ],
+  source: {
+    excludePattern: '(^|\\/|\\\\)[._]',
+    include: [
+      'build/src',
+      'protos'
+    ],
+    includePattern: '\\.js$'
+  },
+  templates: {
+    copyright: 'Copyright 2022 Google LLC',
+    includeDate: false,
+    sourceFiles: false,
+    systemName: '@google-cloud/life-sciences',
+    theme: 'lumen',
+    default: {
+      outputSourceFiles: false
+    }
+  },
+  markdown: {
+    idInHeadings: true
+  }
+};

packages/google-cloud-lifesciences/.mocharc.js

@@ -0,0 +1,29 @@
+// Copyright 2022 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      http://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+const config = {
+  "enable-source-maps": true,
+  "throw-deprecation": true,
+  "timeout": 10000,
+  "recursive": true
+}
+if (process.env.MOCHA_THROW_DEPRECATION === 'false') {
+  delete config['throw-deprecation'];
+}
+if (process.env.MOCHA_REPORTER) {
+  config.reporter = process.env.MOCHA_REPORTER;
+}
+if (process.env.MOCHA_REPORTER_OUTPUT) {
+  config['reporter-option'] = `output=${process.env.MOCHA_REPORTER_OUTPUT}`;
+}
+module.exports = config

packages/google-cloud-lifesciences/.nycrc

@@ -0,0 +1,24 @@
+{
+  "report-dir": "./.coverage",
+  "reporter": ["text", "lcov"],
+  "exclude": [
+    "**/*-test",
+    "**/.coverage",
+    "**/apis",
+    "**/benchmark",
+    "**/conformance",
+    "**/docs",
+    "**/samples",
+    "**/scripts",
+    "**/protos",
+    "**/test",
+    "**/*.d.ts",
+    ".jsdoc.js",
+    "**/.jsdoc.js",
+    "karma.conf.js",
+    "webpack-tests.config.js",
+    "webpack.config.js"
+  ],
+  "exclude-after-remap": false,
+  "all": true
+}

packages/google-cloud-lifesciences/.prettierignore

@@ -0,0 +1,6 @@
+**/node_modules
+**/coverage
+test/fixtures
+build/
+docs/
+protos/

packages/google-cloud-lifesciences/.prettierrc.js

@@ -0,0 +1,17 @@
+// Copyright 2022 Google LLC
+//
+// Licensed under the Apache License, Version 2.0 (the "License");
+// you may not use this file except in compliance with the License.
+// You may obtain a copy of the License at
+//
+//      https://www.apache.org/licenses/LICENSE-2.0
+//
+// Unless required by applicable law or agreed to in writing, software
+// distributed under the License is distributed on an "AS IS" BASIS,
+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+// See the License for the specific language governing permissions and
+// limitations under the License.
+
+module.exports = {
+  ...require('gts/.prettierrc.json')
+}

packages/google-cloud-lifesciences/.repo-metadata.json

@@ -0,0 +1,16 @@
+{
+  "name": "lifesciences",
+  "name_pretty": "Cloud Life Sciences",
+  "product_documentation": "https://cloud.google.com/life-sciences/",
+  "client_documentation": "https://cloud.google.com/nodejs/docs/reference/life-sciences/latest",
+  "issue_tracker": "https://github.com/googleapis/google-cloud-node/issues",
+  "release_level": "preview",
+  "language": "nodejs",
+  "repo": "googleapis/google-cloud-node",
+  "distribution_name": "@google-cloud/life-sciences",
+  "api_id": "lifesciences.googleapis.com",
+  "default_version": "v2beta",
+  "requires_billing": true,
+  "api_shortname": "lifesciences",
+  "library_type": "GAPIC_AUTO"
+}

packages/google-cloud-lifesciences/CHANGELOG.md

@@ -0,0 +1,88 @@
+# Changelog
+
+## [2.1.2](https://github.com/googleapis/nodejs-life-sciences/compare/v2.1.1...v2.1.2) (2022-11-10)
+
+
+### Bug Fixes
+
+* **deps:** Use google-gax v3.5.2 ([#101](https://github.com/googleapis/nodejs-life-sciences/issues/101)) ([106359e](https://github.com/googleapis/nodejs-life-sciences/commit/106359e0689f5085b7fb19ec36d7217648ad556b))
+* Preserve default values in x-goog-request-params header ([#94](https://github.com/googleapis/nodejs-life-sciences/issues/94)) ([3e9bcad](https://github.com/googleapis/nodejs-life-sciences/commit/3e9bcad4fca23646c1170a5f13d30e344bc079d3))
+* Regenerated protos JS and TS definitions ([#104](https://github.com/googleapis/nodejs-life-sciences/issues/104)) ([9debd1e](https://github.com/googleapis/nodejs-life-sciences/commit/9debd1eb1f02efc40d30d48806eb6829cbb9cf78))
+
+## [2.1.1](https://github.com/googleapis/nodejs-life-sciences/compare/v2.1.0...v2.1.1) (2022-09-01)
+
+
+### Bug Fixes
+
+* Allow passing gax instance to client constructor ([#93](https://github.com/googleapis/nodejs-life-sciences/issues/93)) ([6b0a26a](https://github.com/googleapis/nodejs-life-sciences/commit/6b0a26af9f0494c389af5186d04e0d3b3a9f1bcd))
+* Better support for fallback mode ([#88](https://github.com/googleapis/nodejs-life-sciences/issues/88)) ([fdc377d](https://github.com/googleapis/nodejs-life-sciences/commit/fdc377dcc414457a8085c71cff5c9b70ffbf3a96))
+* Change import long to require ([#89](https://github.com/googleapis/nodejs-life-sciences/issues/89)) ([dce704a](https://github.com/googleapis/nodejs-life-sciences/commit/dce704abcb99f84e9afd76bcd8704b765d696251))
+* Do not import the whole google-gax from proto JS ([#1553](https://github.com/googleapis/nodejs-life-sciences/issues/1553)) ([#92](https://github.com/googleapis/nodejs-life-sciences/issues/92)) ([c1c554c](https://github.com/googleapis/nodejs-life-sciences/commit/c1c554c55a7e6233d1590d2504b7b9d7d93370f3))
+* Remove pip install statements ([#1546](https://github.com/googleapis/nodejs-life-sciences/issues/1546)) ([#91](https://github.com/googleapis/nodejs-life-sciences/issues/91)) ([bb1206d](https://github.com/googleapis/nodejs-life-sciences/commit/bb1206d04652a2e1f505cde61cfe84e410b7f221))
+
+## [2.1.0](https://github.com/googleapis/nodejs-life-sciences/compare/v2.0.0...v2.1.0) (2022-06-30)
+
+
+### Features
+
+* support regapic LRO ([#83](https://github.com/googleapis/nodejs-life-sciences/issues/83)) ([c43760a](https://github.com/googleapis/nodejs-life-sciences/commit/c43760a40221e78ed755bf357bf5d76bec8dff6f))
+
+## [2.0.0](https://github.com/googleapis/nodejs-life-sciences/compare/v1.1.1...v2.0.0) (2022-05-19)
+
+
+### ⚠ BREAKING CHANGES
+
+* update library to use Node 12 (#77)
+
+### Build System
+
+* update library to use Node 12 ([#77](https://github.com/googleapis/nodejs-life-sciences/issues/77)) ([3130af4](https://github.com/googleapis/nodejs-life-sciences/commit/3130af44cc9e8d0b98daef92a828a96cbea874c1))
+
+### [1.1.1](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.1.0...v1.1.1) (2021-09-08)
+
+
+### Bug Fixes
+
+* **build:** update branch to main ([#32](https://www.github.com/googleapis/nodejs-life-sciences/issues/32)) ([9e0bab6](https://www.github.com/googleapis/nodejs-life-sciences/commit/9e0bab622b3490529e5fb6f7a462a47f3feb4681))
+
+## [1.1.0](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.3...v1.1.0) (2021-08-23)
+
+
+### Features
+
+* turns on self-signed JWT feature flag ([#29](https://www.github.com/googleapis/nodejs-life-sciences/issues/29)) ([c7e5c54](https://www.github.com/googleapis/nodejs-life-sciences/commit/c7e5c542ccdeb6b5085ecc0e93b16cb41dc41c28))
+
+### [1.0.3](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.2...v1.0.3) (2021-08-17)
+
+
+### Bug Fixes
+
+* **deps:** google-gax v2.24.1 ([#27](https://www.github.com/googleapis/nodejs-life-sciences/issues/27)) ([0efb8e0](https://www.github.com/googleapis/nodejs-life-sciences/commit/0efb8e0cb6e817f5ae761c90cfea0d33f3eb06ee))
+
+### [1.0.2](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.1...v1.0.2) (2021-07-22)
+
+
+### Bug Fixes
+
+* Updating WORKSPACE files to use the newest version of the Typescript generator ([fc315eb](https://www.github.com/googleapis/nodejs-life-sciences/commit/fc315ebafb6ce1124a7c5dcca98af617acf8e16c))
+
+### [1.0.1](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.0...v1.0.1) (2021-07-12)
+
+
+### Bug Fixes
+
+* **deps:** google-gax v2.17.1 ([#13](https://www.github.com/googleapis/nodejs-life-sciences/issues/13)) ([80d5d58](https://www.github.com/googleapis/nodejs-life-sciences/commit/80d5d583602f27319172fb4e4d2ed7c7493a2eba))
+
+## 1.0.0 (2021-06-30)
+
+
+### Features
+
+* add tests and samples to library ([#9](https://www.github.com/googleapis/nodejs-life-sciences/issues/9)) ([e78a083](https://www.github.com/googleapis/nodejs-life-sciences/commit/e78a08373dfce628f9b9b0fc09b9944ae6d0e666))
+* initial gen of templates ([f92b3b6](https://www.github.com/googleapis/nodejs-life-sciences/commit/f92b3b6309cf6ee72d204eec83c56f15eab9f786))
+* initial stub of library ([8bb393d](https://www.github.com/googleapis/nodejs-life-sciences/commit/8bb393dfe738d80b4c3d324b0eb82f8df5feb630))
+
+
+### Bug Fixes
+
+* **deps:** require google-gax v2.17.0 ([#8](https://www.github.com/googleapis/nodejs-life-sciences/issues/8)) ([35952f2](https://www.github.com/googleapis/nodejs-life-sciences/commit/35952f213d7b41db9507a0dd7df594165d035ee7))

packages/google-cloud-lifesciences/CODE_OF_CONDUCT.md

@@ -0,0 +1,94 @@
+<!-- # Generated by synthtool. DO NOT EDIT! !-->
+# Code of Conduct
+
+## Our Pledge
+
+In the interest of fostering an open and welcoming environment, we as
+contributors and maintainers pledge to making participation in our project and
+our community a harassment-free experience for everyone, regardless of age, body
+size, disability, ethnicity, gender identity and expression, level of
+experience, education, socio-economic status, nationality, personal appearance,
+race, religion, or sexual identity and orientation.
+
+## Our Standards
+
+Examples of behavior that contributes to creating a positive environment
+include:
+
+*   Using welcoming and inclusive language
+*   Being respectful of differing viewpoints and experiences
+*   Gracefully accepting constructive criticism
+*   Focusing on what is best for the community
+*   Showing empathy towards other community members
+
+Examples of unacceptable behavior by participants include:
+
+*   The use of sexualized language or imagery and unwelcome sexual attention or
+    advances
+*   Trolling, insulting/derogatory comments, and personal or political attacks
+*   Public or private harassment
+*   Publishing others' private information, such as a physical or electronic
+    address, without explicit permission
+*   Other conduct which could reasonably be considered inappropriate in a
+    professional setting
+
+## Our Responsibilities
+
+Project maintainers are responsible for clarifying the standards of acceptable
+behavior and are expected to take appropriate and fair corrective action in
+response to any instances of unacceptable behavior.
+
+Project maintainers have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, or to ban temporarily or permanently any
+contributor for other behaviors that they deem inappropriate, threatening,
+offensive, or harmful.
+
+## Scope
+
+This Code of Conduct applies both within project spaces and in public spaces
+when an individual is representing the project or its community. Examples of
+representing a project or community include using an official project e-mail
+address, posting via an official social media account, or acting as an appointed
+representative at an online or offline event. Representation of a project may be
+further defined and clarified by project maintainers.
+
+This Code of Conduct also applies outside the project spaces when the Project
+Steward has a reasonable belief that an individual's behavior may have a
+negative impact on the project or its community.
+
+## Conflict Resolution
+
+We do not believe that all conflict is bad; healthy debate and disagreement
+often yield positive results. However, it is never okay to be disrespectful or
+to engage in behavior that violates the project’s code of conduct.
+
+If you see someone violating the code of conduct, you are encouraged to address
+the behavior directly with those involved. Many issues can be resolved quickly
+and easily, and this gives people more control over the outcome of their
+dispute. If you are unable to resolve the matter for any reason, or if the
+behavior is threatening or harassing, report it. We are dedicated to providing
+an environment where participants feel welcome and safe.
+
+Reports should be directed to *googleapis-stewards@google.com*, the
+Project Steward(s) for *Google Cloud Client Libraries*. It is the Project Steward’s duty to
+receive and address reported violations of the code of conduct. They will then
+work with a committee consisting of representatives from the Open Source
+Programs Office and the Google Open Source Strategy team. If for any reason you
+are uncomfortable reaching out to the Project Steward, please email
+opensource@google.com.
+
+We will investigate every complaint, but you may not receive a direct response.
+We will use our discretion in determining when and how to follow up on reported
+incidents, which may range from not taking action to permanent expulsion from
+the project and project-sponsored spaces. We will notify the accused of the
+report and provide them an opportunity to discuss it before any action is taken.
+The identity of the reporter will be omitted from the details of the report
+supplied to the accused. In potentially harmful situations, such as ongoing
+harassment or threats to anyone's safety, we may take action without notice.
+
+## Attribution
+
+This Code of Conduct is adapted from the Contributor Covenant, version 1.4,
+available at
+https://www.contributor-covenant.org/version/1/4/code-of-conduct.html