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migrate code from googleapis/nodejs-life-sciences #3583

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@sofisl sofisl commented Nov 11, 2022

Thank you for opening a Pull Request! Before submitting your PR, there are a few things you can do to make sure it goes smoothly:

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Fixes #<issue_number_goes_here> 🦕

sofisl and others added 30 commits June 8, 2021 05:27
* chore(deps): update dependency sinon to v11

* 🦉 Updates from OwlBot

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* chore: add SECURITY.md

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* feat: add tests and samples to library

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chore: use gapic-generator-typescript v2.1.0
Committer: @alexander-fenster
PiperOrigin-RevId: 385246182
Source-Link: googleapis/googleapis@d767d0a
Source-Link: googleapis/googleapis-gen@e44f054

fix: Updating WORKSPACE files to use the newest version of the Typescript generator
PiperOrigin-RevId: 385101839
Source-Link: googleapis/googleapis@80f4042
Source-Link: googleapis/googleapis-gen@d3509d2
🤖 I have created a release \*beep\* \*boop\*
---
### [1.0.2](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.1...v1.0.2) (2021-07-22)


### Bug Fixes

* Updating WORKSPACE files to use the newest version of the Typescript generator ([fc315eb](https://www.github.com/googleapis/nodejs-life-sciences/commit/fc315ebafb6ce1124a7c5dcca98af617acf8e16c))
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### [`v12.0.1`](https://togithub.com/sinonjs/sinon/blob/master/CHANGES.md#&#8203;1201)

[Compare Source](https://togithub.com/sinonjs/sinon/compare/v12.0.0...v12.0.1)

-   [`3f598221`](https://togithub.com/sinonjs/sinon/commit/3f598221045904681f2b3b3ba1df617ed5e230e3)
    Fix issue with npm unlink for npm version > 6 (Carl-Erik Kopseng)
    > 'npm unlink' would implicitly unlink the current dir
    > until version 7, which requires an argument
-   [`51417a38`](https://togithub.com/sinonjs/sinon/commit/51417a38111eeeb7cd14338bfb762cc2df487e1b)
    Fix bundling of cjs module ([#&#8203;2412](https://togithub.com/sinonjs/sinon/issues/2412)) (Julian Grinblat)
    > -   Fix bundling of cjs module
    >
    > -   Run prettier

*Released by [Carl-Erik Kopseng](https://togithub.com/fatso83) on 2021-11-04.*

#### 12.0.0

### [`v12.0.0`](https://togithub.com/sinonjs/sinon/compare/v11.1.2...v12.0.0)

[Compare Source](https://togithub.com/sinonjs/sinon/compare/v11.1.2...v12.0.0)

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…andwritten libraries (#62)

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#72)

* build(node): add feat in node post-processor to add client library version number in snippet metadata

Co-authored-by: Benjamin E. Coe <bencoe@google.com>
Source-Link: googleapis/synthtool@d337b88
Post-Processor: gcr.io/cloud-devrel-public-resources/owlbot-nodejs:latest@sha256:d106724ad2a96daa1b8d88de101ba50bdb30b8df62ffa0aa2b451d93b4556641

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This PR contains the following updates:

| Package | Change | Age | Adoption | Passing | Confidence |
|---|---|---|---|---|---|
| [sinon](https://sinonjs.org/) ([source](https://togithub.com/sinonjs/sinon)) | [`^13.0.0` -> `^14.0.0`](https://renovatebot.com/diffs/npm/sinon/13.0.2/14.0.0) | [![age](https://badges.renovateapi.com/packages/npm/sinon/14.0.0/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/sinon/14.0.0/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/sinon/14.0.0/compatibility-slim/13.0.2)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/sinon/14.0.0/confidence-slim/13.0.2)](https://docs.renovatebot.com/merge-confidence/) |

---

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### [`v14.0.0`](https://togithub.com/sinonjs/sinon/blob/HEAD/CHANGES.md#&#8203;1400)

[Compare Source](https://togithub.com/sinonjs/sinon/compare/v13.0.2...v14.0.0)

-   [`c2bbd826`](https://togithub.com/sinonjs/sinon/commit/c2bbd82641444eb5b32822489ae40f185afbbf00)
    Drop node 12 (Morgan Roderick)
    > And embrace Node 18
    >
    > See https://nodejs.org/en/about/releases/

*Released by Morgan Roderick on 2022-05-07.*

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| Package | Change | Age | Adoption | Passing | Confidence |
|---|---|---|---|---|---|
| [jsdoc-region-tag](https://togithub.com/googleapis/jsdoc-region-tag) | [`^1.0.6` -> `^2.0.0`](https://renovatebot.com/diffs/npm/jsdoc-region-tag/1.3.1/2.0.0) | [![age](https://badges.renovateapi.com/packages/npm/jsdoc-region-tag/2.0.0/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/jsdoc-region-tag/2.0.0/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/jsdoc-region-tag/2.0.0/compatibility-slim/1.3.1)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/jsdoc-region-tag/2.0.0/confidence-slim/1.3.1)](https://docs.renovatebot.com/merge-confidence/) |

---

### Release Notes

<details>
<summary>googleapis/jsdoc-region-tag</summary>

### [`v2.0.0`](https://togithub.com/googleapis/jsdoc-region-tag/blob/HEAD/CHANGELOG.md#&#8203;200-httpsgithubcomgoogleapisjsdoc-region-tagcomparev131v200-2022-05-20)

[Compare Source](https://togithub.com/googleapis/jsdoc-region-tag/compare/v1.3.1...v2.0.0)

##### ⚠ BREAKING CHANGES

-   update library to use Node 12 ([#&#8203;107](https://togithub.com/googleapis/jsdoc-region-tag/issues/107))

##### Build System

-   update library to use Node 12 ([#&#8203;107](https://togithub.com/googleapis/jsdoc-region-tag/issues/107)) ([5b51796](https://togithub.com/googleapis/jsdoc-region-tag/commit/5b51796771984cf8b978990025f14faa03c19923))

##### [1.3.1](https://www.github.com/googleapis/jsdoc-region-tag/compare/v1.3.0...v1.3.1) (2021-08-11)

##### Bug Fixes

-   **build:** migrate to using main branch ([#&#8203;79](https://www.togithub.com/googleapis/jsdoc-region-tag/issues/79)) ([5050615](https://www.github.com/googleapis/jsdoc-region-tag/commit/50506150b7758592df5e389c6a5c3d82b3b20881))

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<details>
<summary>googleapis/jsdoc-fresh</summary>

### [`v2.0.0`](https://togithub.com/googleapis/jsdoc-fresh/blob/HEAD/CHANGELOG.md#&#8203;200-httpsgithubcomgoogleapisjsdoc-freshcomparev111v200-2022-05-18)

[Compare Source](https://togithub.com/googleapis/jsdoc-fresh/compare/v1.1.1...v2.0.0)

##### ⚠ BREAKING CHANGES

-   update library to use Node 12 ([#&#8203;108](https://togithub.com/googleapis/jsdoc-fresh/issues/108))

##### Build System

-   update library to use Node 12 ([#&#8203;108](https://togithub.com/googleapis/jsdoc-fresh/issues/108)) ([e61c223](https://togithub.com/googleapis/jsdoc-fresh/commit/e61c2238db8900e339e5fe7fb8aea09642290182))

##### [1.1.1](https://www.github.com/googleapis/jsdoc-fresh/compare/v1.1.0...v1.1.1) (2021-08-11)

##### Bug Fixes

-   **build:** migrate to using main branch ([#&#8203;83](https://www.togithub.com/googleapis/jsdoc-fresh/issues/83)) ([9474adb](https://www.github.com/googleapis/jsdoc-fresh/commit/9474adbf0d559d319ff207397ba2be6b557999ac))

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* feat: support regapic LRO

Use gapic-generator-typescript v2.15.1.

PiperOrigin-RevId: 456946341

Source-Link: googleapis/googleapis@88fd18d

Source-Link: googleapis/googleapis-gen@accfa37
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🤖 I have created a release *beep* *boop*
---


## [2.1.0](googleapis/nodejs-life-sciences@v2.0.0...v2.1.0) (2022-06-30)


### Features

* support regapic LRO ([#83](googleapis/nodejs-life-sciences#83)) ([c43760a](googleapis/nodejs-life-sciences@c43760a))

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This PR contains the following updates:

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[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v4.0.1...v4.0.2)

##### Bug Fixes

-   address srcset parsing with multiple spaces ([#&#8203;512](https://togithub.com/JustinBeckwith/linkinator/issues/512)) ([fefb5b6](https://togithub.com/JustinBeckwith/linkinator/commit/fefb5b6734fc4ab335793358c5f491338ecbeb90))

### [`v4.0.1`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v4.0.1)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v4.0.0...v4.0.1)

##### Bug Fixes

-   properly parse srcset attribute ([#&#8203;510](https://togithub.com/JustinBeckwith/linkinator/issues/510)) ([9a8a83c](https://togithub.com/JustinBeckwith/linkinator/commit/9a8a83c35182b3cd4daee62a00f156767fe5c6a7))

### [`v4.0.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v4.0.0)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.1.0...v4.0.0)

##### Features

-   create new release with notes ([#&#8203;508](https://togithub.com/JustinBeckwith/linkinator/issues/508)) ([2cab633](https://togithub.com/JustinBeckwith/linkinator/commit/2cab633c9659eb10794a4bac06f8b0acdc3e2c0c))

##### BREAKING CHANGES

-   The commits in [#&#8203;507](https://togithub.com/JustinBeckwith/linkinator/issues/507) and [#&#8203;506](https://togithub.com/JustinBeckwith/linkinator/issues/506) both had breaking changes.  They included dropping support for Node.js 12.x and updating the CSV export to be streaming, and to use a new way of writing the CSV file.  This is an empty to commit using the `BREAKING CHANGE` format in the commit message to ensure a release is triggered.

### [`v3.1.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.1.0)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.6...v3.1.0)

##### Features

-   allow --skip to be defined multiple times ([#&#8203;399](https://togithub.com/JustinBeckwith/linkinator/issues/399)) ([5ca5a46](https://togithub.com/JustinBeckwith/linkinator/commit/5ca5a461508e688de12e5ae6b4cfb6565f832ebf))

### [`v3.0.6`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.6)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.5...v3.0.6)

##### Bug Fixes

-   **deps:** upgrade node-glob to v8 ([#&#8203;397](https://togithub.com/JustinBeckwith/linkinator/issues/397)) ([d334dc6](https://togithub.com/JustinBeckwith/linkinator/commit/d334dc6734cd7c2b73d7ed3dea0550a6c3072ad5))

### [`v3.0.5`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.5)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.4...v3.0.5)

##### Bug Fixes

-   **deps:** upgrade to htmlparser2 v8.0.1 ([#&#8203;396](https://togithub.com/JustinBeckwith/linkinator/issues/396)) ([ba3b9a8](https://togithub.com/JustinBeckwith/linkinator/commit/ba3b9a8a9b19d39af6ed91790135e833b80c1eb6))

### [`v3.0.4`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.4)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.3...v3.0.4)

##### Bug Fixes

-   **deps:** update dependency gaxios to v5 ([#&#8203;391](https://togithub.com/JustinBeckwith/linkinator/issues/391)) ([48af50e](https://togithub.com/JustinBeckwith/linkinator/commit/48af50e787731204aeb7eff41325c62291311e45))

### [`v3.0.3`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.3)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.2...v3.0.3)

##### Bug Fixes

-   export getConfig from index ([#&#8203;371](https://togithub.com/JustinBeckwith/linkinator/issues/371)) ([0bc0355](https://togithub.com/JustinBeckwith/linkinator/commit/0bc0355c7e2ea457f247e6b52d1577b8c4ecb3a1))

### [`v3.0.2`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.2)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.1...v3.0.2)

##### Bug Fixes

-   allow server root with trailing slash ([#&#8203;370](https://togithub.com/JustinBeckwith/linkinator/issues/370)) ([8adf6b0](https://togithub.com/JustinBeckwith/linkinator/commit/8adf6b025fda250e38461f1cdad40fe08c3b3b7c))

### [`v3.0.1`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.1)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.0...v3.0.1)

##### Bug Fixes

-   decode path parts in local web server ([#&#8203;369](https://togithub.com/JustinBeckwith/linkinator/issues/369)) ([4696a0c](https://togithub.com/JustinBeckwith/linkinator/commit/4696a0c38c341b178ed815f47371fca955979feb))

### [`v3.0.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.0)

[Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v2.16.2...v3.0.0)

##### Bug Fixes

-   **deps:** update dependency chalk to v5 ([#&#8203;362](https://togithub.com/JustinBeckwith/linkinator/issues/362)) ([4b17a8d](https://togithub.com/JustinBeckwith/linkinator/commit/4b17a8d87b649eaf813428f8ee6955e1d21dae4f))

-   feat!: convert to es modules, drop node 10 ([#&#8203;359](https://togithub.com/JustinBeckwith/linkinator/issues/359)) ([efee299](https://togithub.com/JustinBeckwith/linkinator/commit/efee299ab8a805accef751eecf8538915a4e7783)), closes [#&#8203;359](https://togithub.com/JustinBeckwith/linkinator/issues/359)

##### BREAKING CHANGES

-   this module now requires node.js 12 and above, and has moved to es modules by default.

</details>

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fix: use google-gax v3.3.0
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feat: accept google-gax instance as a parameter
Please see the documentation of the client constructor for details.

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* chore(main): release 2.1.1

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* test: use fully qualified request type name in tests

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This PR contains the following updates:

| Package | Change | Age | Adoption | Passing | Confidence |
|---|---|---|---|---|---|
| [@types/node](https://togithub.com/DefinitelyTyped/DefinitelyTyped/tree/master/types/node) ([source](https://togithub.com/DefinitelyTyped/DefinitelyTyped)) | [`^16.0.0` -> `^18.0.0`](https://renovatebot.com/diffs/npm/@types%2fnode/16.18.3/18.11.9) | [![age](https://badges.renovateapi.com/packages/npm/@types%2fnode/18.11.9/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/@types%2fnode/18.11.9/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/@types%2fnode/18.11.9/compatibility-slim/16.18.3)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/@types%2fnode/18.11.9/confidence-slim/16.18.3)](https://docs.renovatebot.com/merge-confidence/) |

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samples: pull in latest typeless bot, clean up some comments

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This PR contains the following updates:

| Package | Change | Age | Adoption | Passing | Confidence |
|---|---|---|---|---|---|
| [jsdoc](https://togithub.com/jsdoc/jsdoc) | [`^3.6.6` -> `^4.0.0`](https://renovatebot.com/diffs/npm/jsdoc/3.6.11/4.0.0) | [![age](https://badges.renovateapi.com/packages/npm/jsdoc/4.0.0/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/jsdoc/4.0.0/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/jsdoc/4.0.0/compatibility-slim/3.6.11)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/jsdoc/4.0.0/confidence-slim/3.6.11)](https://docs.renovatebot.com/merge-confidence/) |

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### Release Notes

<details>
<summary>jsdoc/jsdoc</summary>

### [`v4.0.0`](https://togithub.com/jsdoc/jsdoc/blob/HEAD/CHANGES.md#&#8203;400-November-2022)

[Compare Source](https://togithub.com/jsdoc/jsdoc/compare/3.6.11...084218523a7d69fec14a852ce680f374f526af28)

-   JSDoc releases now use [semantic versioning](https://semver.org/). If JSDoc makes
    backwards-incompatible changes in the future, the major version will be incremented.
-   JSDoc no longer uses the [`taffydb`](https://taffydb.com/) package. If your JSDoc template or
    plugin uses the `taffydb` package, see the
    [instructions for replacing `taffydb` with `@jsdoc/salty`](https://togithub.com/jsdoc/jsdoc/tree/main/packages/jsdoc-salty#use-salty-in-a-jsdoc-template).
-   JSDoc now supports Node.js 12.0.0 and later.

</details>

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@sofisl sofisl requested a review from a team as a code owner November 11, 2022 10:32
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Thanks for your pull request! It looks like this may be your first contribution to a Google open source project. Before we can look at your pull request, you'll need to sign a Contributor License Agreement (CLA).

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@sofisl sofisl merged commit 19ca7ff into main Nov 12, 2022
@sofisl sofisl deleted the nodejs-life-sciences-migration branch November 12, 2022 05:13
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