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migrate code from googleapis/nodejs-life-sciences #3583

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merged 64 commits into from
Nov 12, 2022

Commits on Jun 8, 2021

  1. feat: initial stub of library

    sofisl committed Jun 8, 2021
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Commits on Jun 11, 2021

  1. add license

    sofisl committed Jun 11, 2021
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Commits on Jun 17, 2021

  1. feat: initial gen of templates

    sofisl committed Jun 17, 2021
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Commits on Jun 27, 2021

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  2. chore(deps): update dependency sinon to v11 (#5)

    * chore(deps): update dependency sinon to v11
    
    * 🦉 Updates from OwlBot
    
    See https://github.com/googleapis/repo-automation-bots/blob/master/packages/owl-bot/README.md
    
    Co-authored-by: Owl Bot <gcf-owl-bot[bot]@users.noreply.github.com>
    Co-authored-by: Justin Beckwith <justin.beckwith@gmail.com>
    3 people authored Jun 27, 2021
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  3. chore: add SECURITY.md (#3)

    * chore: add SECURITY.md
    
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Commits on Jun 30, 2021

  1. feat: add tests and samples to library (#9)

    * feat: add tests and samples to library
    
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    sofisl authored Jun 30, 2021
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  3. fix(deps): require google-gax v2.17.0 (#8)

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    bcoe and sofisl authored Jun 30, 2021
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Commits on Jul 1, 2021

  1. chore: release 1.0.0 (#1)

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Commits on Jul 22, 2021

  1. build(nodejs): fix naming for package name (#17)

    PiperOrigin-RevId: 385853197
    Source-Link: googleapis/googleapis@43fda80
    Source-Link: googleapis/googleapis-gen@fa2adb5
    
    chore: use gapic-generator-typescript v2.1.0
    Committer: @alexander-fenster
    PiperOrigin-RevId: 385246182
    Source-Link: googleapis/googleapis@d767d0a
    Source-Link: googleapis/googleapis-gen@e44f054
    
    fix: Updating WORKSPACE files to use the newest version of the Typescript generator
    PiperOrigin-RevId: 385101839
    Source-Link: googleapis/googleapis@80f4042
    Source-Link: googleapis/googleapis-gen@d3509d2
    gcf-owl-bot[bot] authored Jul 22, 2021
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  2. chore: release 1.0.2 (#20)

    🤖 I have created a release \*beep\* \*boop\*
    ---
    ### [1.0.2](https://www.github.com/googleapis/nodejs-life-sciences/compare/v1.0.1...v1.0.2) (2021-07-22)
    
    
    ### Bug Fixes
    
    * Updating WORKSPACE files to use the newest version of the Typescript generator ([fc315eb](https://www.github.com/googleapis/nodejs-life-sciences/commit/fc315ebafb6ce1124a7c5dcca98af617acf8e16c))
    ---
    
    
    This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please).
    release-please[bot] authored Jul 22, 2021
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  3. chore(deps): update dependency @types/mocha to v9 (#19)

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Commits on Aug 23, 2021

  1. feat: turns on self-signed JWT feature flag (#29)

    - [ ] Regenerate this pull request now.
    
    PiperOrigin-RevId: 392067151
    
    Source-Link: googleapis/googleapis@06345f7
    
    Source-Link: googleapis/googleapis-gen@95882b3
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Commits on Oct 27, 2021

  1. chore: fix the wrong post processor image (#42)

    Takashi Matsuo authored Oct 27, 2021
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  2. chore(deps): update dependency @types/node to v16 (#41)

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  2. chore(deps): update dependency sinon to v12 (#43)

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    This PR contains the following updates:
    
    | Package | Change | Age | Adoption | Passing | Confidence |
    |---|---|---|---|---|---|
    | [sinon](https://sinonjs.org/) ([source](https://togithub.com/sinonjs/sinon)) | [`^11.0.0` -> `^12.0.0`](https://renovatebot.com/diffs/npm/sinon/11.1.2/12.0.1) | [![age](https://badges.renovateapi.com/packages/npm/sinon/12.0.1/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/sinon/12.0.1/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/sinon/12.0.1/compatibility-slim/11.1.2)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/sinon/12.0.1/confidence-slim/11.1.2)](https://docs.renovatebot.com/merge-confidence/) |
    
    ---
    
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    <details>
    <summary>sinonjs/sinon</summary>
    
    ### [`v12.0.1`](https://togithub.com/sinonjs/sinon/blob/master/CHANGES.md#&#8203;1201)
    
    [Compare Source](https://togithub.com/sinonjs/sinon/compare/v12.0.0...v12.0.1)
    
    -   [`3f598221`](https://togithub.com/sinonjs/sinon/commit/3f598221045904681f2b3b3ba1df617ed5e230e3)
        Fix issue with npm unlink for npm version > 6 (Carl-Erik Kopseng)
        > 'npm unlink' would implicitly unlink the current dir
        > until version 7, which requires an argument
    -   [`51417a38`](https://togithub.com/sinonjs/sinon/commit/51417a38111eeeb7cd14338bfb762cc2df487e1b)
        Fix bundling of cjs module ([#&#8203;2412](https://togithub.com/sinonjs/sinon/issues/2412)) (Julian Grinblat)
        > -   Fix bundling of cjs module
        >
        > -   Run prettier
    
    *Released by [Carl-Erik Kopseng](https://togithub.com/fatso83) on 2021-11-04.*
    
    #### 12.0.0
    
    ### [`v12.0.0`](https://togithub.com/sinonjs/sinon/compare/v11.1.2...v12.0.0)
    
    [Compare Source](https://togithub.com/sinonjs/sinon/compare/v11.1.2...v12.0.0)
    
    </details>
    
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Commits on Nov 10, 2021

  1. docs(samples): add example tags to generated samples (#45)

    - [ ] Regenerate this pull request now.
    
    PiperOrigin-RevId: 408439482
    
    Source-Link: googleapis/googleapis@b9f6184
    
    Source-Link: googleapis/googleapis-gen@eb888bc
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    gcf-owl-bot[bot] authored Nov 10, 2021
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Commits on Jan 11, 2022

  1. test(nodejs): remove 15 add 16 (#1322) (#53)

    Source-Link: googleapis/synthtool@6981da4
    Post-Processor: gcr.io/cloud-devrel-public-resources/owlbot-nodejs:latest@sha256:3563b6b264989c4f5aa31a3682e4df36c95756cfef275d3201508947cbfc511e
    
    Co-authored-by: Owl Bot <gcf-owl-bot[bot]@users.noreply.github.com>
    gcf-owl-bot[bot] and gcf-owl-bot[bot] authored Jan 11, 2022
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Commits on Jan 20, 2022

  1. build: update copyright year to 2022 (#55)

    * chore(deps): upgrade gapic-generator-java to 2.4.1
    
    PiperOrigin-RevId: 422607515
    
    Source-Link: googleapis/googleapis@ba2ffd6
    
    Source-Link: googleapis/googleapis-gen@73ba4ad
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    * 🦉 Updates from OwlBot
    
    See https://github.com/googleapis/repo-automation-bots/blob/main/packages/owl-bot/README.md
    
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    gcf-owl-bot[bot] and gcf-owl-bot[bot] authored Jan 20, 2022
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Commits on Jan 26, 2022

  1. chore: update v2.12.0 gapic-generator-typescript (#57)

    - [ ] Regenerate this pull request now.
    
    Committer: @summer-ji-eng
    PiperOrigin-RevId: 424244721
    
    Source-Link: googleapis/googleapis@4b6b01f
    
    Source-Link: googleapis/googleapis-gen@8ac83fb
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Commits on Feb 2, 2022

  1. chore(deps): update dependency sinon to v13 (#59)

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    This PR contains the following updates:
    
    | Package | Change | Age | Adoption | Passing | Confidence |
    |---|---|---|---|---|---|
    | [sinon](https://sinonjs.org/) ([source](https://togithub.com/sinonjs/sinon)) | [`^12.0.0` -> `^13.0.0`](https://renovatebot.com/diffs/npm/sinon/12.0.1/13.0.1) | [![age](https://badges.renovateapi.com/packages/npm/sinon/13.0.1/age-slim)](https://docs.renovatebot.com/merge-confidence/) | [![adoption](https://badges.renovateapi.com/packages/npm/sinon/13.0.1/adoption-slim)](https://docs.renovatebot.com/merge-confidence/) | [![passing](https://badges.renovateapi.com/packages/npm/sinon/13.0.1/compatibility-slim/12.0.1)](https://docs.renovatebot.com/merge-confidence/) | [![confidence](https://badges.renovateapi.com/packages/npm/sinon/13.0.1/confidence-slim/12.0.1)](https://docs.renovatebot.com/merge-confidence/) |
    
    ---
    
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    <summary>sinonjs/sinon</summary>
    
    ### [`v13.0.1`](https://togithub.com/sinonjs/sinon/blob/HEAD/CHANGES.md#&#8203;1301)
    
    [Compare Source](https://togithub.com/sinonjs/sinon/compare/v13.0.0...v13.0.1)
    
    -   [`ec4223f9`](https://togithub.com/sinonjs/sinon/commit/ec4223f94076d809483e3c6a7536cfc1278dd3c9)
        Bump nise to fix [sinonjs/nise#&#8203;193](https://togithub.com/sinonjs/nise/issues/193) (Carl-Erik Kopseng)
    -   [`f329a010`](https://togithub.com/sinonjs/sinon/commit/f329a01040bfa5a79e039419220b21eda56935d6)
        Add unimported to workflow ([#&#8203;2441](https://togithub.com/sinonjs/sinon/issues/2441)) (Morgan Roderick)
    -   [`7f16cec9`](https://togithub.com/sinonjs/sinon/commit/7f16cec968c3c8d4e580267fb00195916d6f827d)
        Enable updates to same major version (Carl-Erik Kopseng)
    -   [`f784d7ad`](https://togithub.com/sinonjs/sinon/commit/f784d7ad2c86be0fc65477d69f8bdafca846ef2c)
        Re-introduce new version.sh script to version hook (Joel Bradshaw)
        > This was inadvertently removed during merge conflicts, and is required
        > for any of the new release process stuff to work
    -   [`51c508ab`](https://togithub.com/sinonjs/sinon/commit/51c508ab77cf0f9fb8c5305ff626f6a2eada178f)
        Add dry run mode to `npm version` ([#&#8203;2436](https://togithub.com/sinonjs/sinon/issues/2436)) (Joel Bradshaw)
        > -   Add DRY_RUN flag to skip publish/push
        >
        > -   Allow overriding branch names for testing
    -   [`05341dcf`](https://togithub.com/sinonjs/sinon/commit/05341dcf92ddca4a1d4c90966b1fcdc7039cff18)
        Update npm version scripts to manage new releases branch (Joel Bradshaw)
    -   [`fe658261`](https://togithub.com/sinonjs/sinon/commit/fe65826171db69ed2986a1060db77944dbc98a6d)
        Remove release archives from master (Joel Bradshaw)
        > These archives made it difficult to find things in the GitHub interface,
        > and take up a lot of space in a checked-out repo for something that is
        > not useful to most people checking out the repository.
        >
        > The main purpose of these archives is to make old versions and
        > documentation available on the Sinon website that is run out of this
        > repo. This can be supported by using a separate branch for website
        > releases, and to maintain the archives.
        >
        > Following this commit, the `npm version` scripts will be updated to
        > automatically handle archiving the releases in the new releases branch
        > and keeping it up to date with master.
        >
        > Also remove the directories we removed from .prettierignore, since they
        > don't exist any more.
    
    *Released by [Carl-Erik Kopseng](https://togithub.com/fatso83) on 2022-02-01.*
    
    ### [`v13.0.0`](https://togithub.com/sinonjs/sinon/blob/HEAD/CHANGES.md#&#8203;1300)
    
    [Compare Source](https://togithub.com/sinonjs/sinon/compare/v12.0.1...v13.0.0)
    
    -   [`cf3d6c0c`](https://togithub.com/sinonjs/sinon/commit/cf3d6c0cd9689c0ee673b3daa8bf9abd70304392)
        Upgrade packages ([#&#8203;2431](https://togithub.com/sinonjs/sinon/issues/2431)) (Carl-Erik Kopseng)
        > -   Update all @&#8203;sinonjs/ packages
        >
        > -   Upgrade to fake-timers 9
        >
        > -   chore: ensure always using latest LTS release
    -   [`41710467`](https://togithub.com/sinonjs/sinon/commit/417104670d575e96a1b645ea40ce763afa76fb1b)
        Adjust deploy scripts to archive old releases in a separate branch, move existing releases out of master ([#&#8203;2426](https://togithub.com/sinonjs/sinon/issues/2426)) (Joel Bradshaw)
        > Co-authored-by: Carl-Erik Kopseng <carlerik@gmail.com>
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        Fix 2377: Throw error when trying to stub non-configurable or non-writable properties ([#&#8203;2417](https://togithub.com/sinonjs/sinon/issues/2417)) (Stuart Dotson)
        > Fixes issue [#&#8203;2377](https://togithub.com/sinonjs/sinon/issues/2377) by throwing an error when trying to stub non-configurable or non-writable properties
    
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  1. docs(samples): include metadata file, add exclusions for samples to h…

    …andwritten libraries (#62)
    
    - [ ] Regenerate this pull request now.
    
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  1. build(node): update client library version in samples metadata (#1356) (

    #72)
    
    * build(node): add feat in node post-processor to add client library version number in snippet metadata
    
    Co-authored-by: Benjamin E. Coe <bencoe@google.com>
    Source-Link: googleapis/synthtool@d337b88
    Post-Processor: gcr.io/cloud-devrel-public-resources/owlbot-nodejs:latest@sha256:d106724ad2a96daa1b8d88de101ba50bdb30b8df62ffa0aa2b451d93b4556641
    
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  1. chore(deps): update dependency sinon to v14 (#75)

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        Drop node 12 (Morgan Roderick)
        > And embrace Node 18
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  1. build!: update library to use Node 12 (#77)

    * build!: Update library to use Node 12
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  1. chore(main): release 2.0.0 (#78)

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Commits on Jun 10, 2022

  1. chore(deps): update dependency jsdoc-region-tag to v2 (#82)

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    ### [`v2.0.0`](https://togithub.com/googleapis/jsdoc-region-tag/blob/HEAD/CHANGELOG.md#&#8203;200-httpsgithubcomgoogleapisjsdoc-region-tagcomparev131v200-2022-05-20)
    
    [Compare Source](https://togithub.com/googleapis/jsdoc-region-tag/compare/v1.3.1...v2.0.0)
    
    ##### ⚠ BREAKING CHANGES
    
    -   update library to use Node 12 ([#&#8203;107](https://togithub.com/googleapis/jsdoc-region-tag/issues/107))
    
    ##### Build System
    
    -   update library to use Node 12 ([#&#8203;107](https://togithub.com/googleapis/jsdoc-region-tag/issues/107)) ([5b51796](https://togithub.com/googleapis/jsdoc-region-tag/commit/5b51796771984cf8b978990025f14faa03c19923))
    
    ##### [1.3.1](https://www.github.com/googleapis/jsdoc-region-tag/compare/v1.3.0...v1.3.1) (2021-08-11)
    
    ##### Bug Fixes
    
    -   **build:** migrate to using main branch ([#&#8203;79](https://www.togithub.com/googleapis/jsdoc-region-tag/issues/79)) ([5050615](https://www.github.com/googleapis/jsdoc-region-tag/commit/50506150b7758592df5e389c6a5c3d82b3b20881))
    
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  2. chore(deps): update dependency jsdoc-fresh to v2 (#81)

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    ### [`v2.0.0`](https://togithub.com/googleapis/jsdoc-fresh/blob/HEAD/CHANGELOG.md#&#8203;200-httpsgithubcomgoogleapisjsdoc-freshcomparev111v200-2022-05-18)
    
    [Compare Source](https://togithub.com/googleapis/jsdoc-fresh/compare/v1.1.1...v2.0.0)
    
    ##### ⚠ BREAKING CHANGES
    
    -   update library to use Node 12 ([#&#8203;108](https://togithub.com/googleapis/jsdoc-fresh/issues/108))
    
    ##### Build System
    
    -   update library to use Node 12 ([#&#8203;108](https://togithub.com/googleapis/jsdoc-fresh/issues/108)) ([e61c223](https://togithub.com/googleapis/jsdoc-fresh/commit/e61c2238db8900e339e5fe7fb8aea09642290182))
    
    ##### [1.1.1](https://www.github.com/googleapis/jsdoc-fresh/compare/v1.1.0...v1.1.1) (2021-08-11)
    
    ##### Bug Fixes
    
    -   **build:** migrate to using main branch ([#&#8203;83](https://www.togithub.com/googleapis/jsdoc-fresh/issues/83)) ([9474adb](https://www.github.com/googleapis/jsdoc-fresh/commit/9474adbf0d559d319ff207397ba2be6b557999ac))
    
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  1. feat: support regapic LRO (#83)

    * feat: support regapic LRO
    
    Use gapic-generator-typescript v2.15.1.
    
    PiperOrigin-RevId: 456946341
    
    Source-Link: googleapis/googleapis@88fd18d
    
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  2. chore(main): release 2.1.0 (#84)

    🤖 I have created a release *beep* *boop*
    ---
    
    
    ## [2.1.0](googleapis/nodejs-life-sciences@v2.0.0...v2.1.0) (2022-06-30)
    
    
    ### Features
    
    * support regapic LRO ([#83](googleapis/nodejs-life-sciences#83)) ([c43760a](googleapis/nodejs-life-sciences@c43760a))
    
    ---
    This PR was generated with [Release Please](https://github.com/googleapis/release-please). See [documentation](https://github.com/googleapis/release-please#release-please).
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Commits on Jul 13, 2022

  1. chore(deps): update dependency linkinator to v4 (#87)

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    ### [`v4.0.2`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v4.0.2)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v4.0.1...v4.0.2)
    
    ##### Bug Fixes
    
    -   address srcset parsing with multiple spaces ([#&#8203;512](https://togithub.com/JustinBeckwith/linkinator/issues/512)) ([fefb5b6](https://togithub.com/JustinBeckwith/linkinator/commit/fefb5b6734fc4ab335793358c5f491338ecbeb90))
    
    ### [`v4.0.1`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v4.0.1)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v4.0.0...v4.0.1)
    
    ##### Bug Fixes
    
    -   properly parse srcset attribute ([#&#8203;510](https://togithub.com/JustinBeckwith/linkinator/issues/510)) ([9a8a83c](https://togithub.com/JustinBeckwith/linkinator/commit/9a8a83c35182b3cd4daee62a00f156767fe5c6a7))
    
    ### [`v4.0.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v4.0.0)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.1.0...v4.0.0)
    
    ##### Features
    
    -   create new release with notes ([#&#8203;508](https://togithub.com/JustinBeckwith/linkinator/issues/508)) ([2cab633](https://togithub.com/JustinBeckwith/linkinator/commit/2cab633c9659eb10794a4bac06f8b0acdc3e2c0c))
    
    ##### BREAKING CHANGES
    
    -   The commits in [#&#8203;507](https://togithub.com/JustinBeckwith/linkinator/issues/507) and [#&#8203;506](https://togithub.com/JustinBeckwith/linkinator/issues/506) both had breaking changes.  They included dropping support for Node.js 12.x and updating the CSV export to be streaming, and to use a new way of writing the CSV file.  This is an empty to commit using the `BREAKING CHANGE` format in the commit message to ensure a release is triggered.
    
    ### [`v3.1.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.1.0)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.6...v3.1.0)
    
    ##### Features
    
    -   allow --skip to be defined multiple times ([#&#8203;399](https://togithub.com/JustinBeckwith/linkinator/issues/399)) ([5ca5a46](https://togithub.com/JustinBeckwith/linkinator/commit/5ca5a461508e688de12e5ae6b4cfb6565f832ebf))
    
    ### [`v3.0.6`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.6)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.5...v3.0.6)
    
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    -   **deps:** upgrade node-glob to v8 ([#&#8203;397](https://togithub.com/JustinBeckwith/linkinator/issues/397)) ([d334dc6](https://togithub.com/JustinBeckwith/linkinator/commit/d334dc6734cd7c2b73d7ed3dea0550a6c3072ad5))
    
    ### [`v3.0.5`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.5)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.4...v3.0.5)
    
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    -   **deps:** upgrade to htmlparser2 v8.0.1 ([#&#8203;396](https://togithub.com/JustinBeckwith/linkinator/issues/396)) ([ba3b9a8](https://togithub.com/JustinBeckwith/linkinator/commit/ba3b9a8a9b19d39af6ed91790135e833b80c1eb6))
    
    ### [`v3.0.4`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.4)
    
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    ### [`v3.0.2`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.2)
    
    [Compare Source](https://togithub.com/JustinBeckwith/linkinator/compare/v3.0.1...v3.0.2)
    
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    ### [`v3.0.0`](https://togithub.com/JustinBeckwith/linkinator/releases/tag/v3.0.0)
    
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    -   feat!: convert to es modules, drop node 10 ([#&#8203;359](https://togithub.com/JustinBeckwith/linkinator/issues/359)) ([efee299](https://togithub.com/JustinBeckwith/linkinator/commit/efee299ab8a805accef751eecf8538915a4e7783)), closes [#&#8203;359](https://togithub.com/JustinBeckwith/linkinator/issues/359)
    
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Commits on Aug 23, 2022

  1. fix: better support for fallback mode (#88)

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  2. fix: change import long to require (#89)

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Commits on Aug 27, 2022

  1. fix: do not import the whole google-gax from proto JS (#1553) (#92)

    fix: use google-gax v3.3.0
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Commits on Sep 1, 2022

  1. fix: allow passing gax instance to client constructor (#93)

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    feat: accept google-gax instance as a parameter
    Please see the documentation of the client constructor for details.
    
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  1. chore(main): release 2.1.1 (#90)

    * chore(main): release 2.1.1
    
    * 🦉 Updates from OwlBot post-processor
    
    See https://github.com/googleapis/repo-automation-bots/blob/main/packages/owl-bot/README.md
    
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Commits on Sep 14, 2022

  1. fix: preserve default values in x-goog-request-params header (#94)

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Commits on Sep 23, 2022

  1. test: use fully qualified request type name in tests (#97)

    * test: use fully qualified request type name in tests
    
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Commits on Nov 10, 2022

  1. chore(deps): update dependency @types/node to v18 (#99)

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  2. fix: regenerated protos JS and TS definitions (#104)

    samples: pull in latest typeless bot, clean up some comments
    
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  3. chore(deps): update dependency jsdoc to v4 (#103)

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    -   JSDoc releases now use [semantic versioning](https://semver.org/). If JSDoc makes
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    -   JSDoc now supports Node.js 12.0.0 and later.
    
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