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[ENH] integrates anat and func QA as part of bidsSpatialPrepro #466

Merged
merged 21 commits into from
Jan 10, 2022
Merged

[ENH] integrates anat and func QA as part of bidsSpatialPrepro #466

merged 21 commits into from
Jan 10, 2022

Commits on Jan 9, 2022

  1. update TODOs

    @Remi-Gau
    Remi-Gau committed Jan 9, 2022
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Commits on Jan 10, 2022

  1. add outliers to default BIDS model

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  2. incorporates anat QA in bidsSpatialPrepro

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  3. add warning to reportBIDS

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  4. lint

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  5. fix on the query to find the right gifti file

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  6. update options for renaming and skipping anat QA

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  7. update dataDict creation

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  8. integrate functionalQA in bidsSpatialPrepro

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  9. update demos

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  10. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jan 10, 2022
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  11. remove extracted subfunction

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  12. update manual test 

    update manual tests
    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  13. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jan 10, 2022
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  14. add tests for confounds headers

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  15. lint

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  16. update some doc

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  17. lint

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  18. fix line skips 

    fix line skips
    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  19. update doc

    @Remi-Gau
    Remi-Gau committed Jan 10, 2022
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  20. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
    @pre-commit-ci
    pre-commit-ci[bot] committed Jan 10, 2022
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