Closed
Description
Is there an existing issue for this?
- I have searched the existing issues
Operating system
- Linux
- Mac
- Windows
Operating system version
No response
SPM 12 version
- 7771
- 7487
- 7219
Platform
- MATLAB
- Octave
Platform version
No response
bidspm version
v3.1.0
bidspm branch / commit number
No response
Expected Behavior
To work with only 1 run even though 2 are present in the bids dataset
BIDS stats model
No response
Current Behavior & Error message
The batch is built in a way that expects 2 sessions at the coregistration level
Error:
21-Feb-2024 21:00:10 - Done 'Realign & Unwarp'
Dependency source available, but is missing required output.
Index exceeds matrix dimensions.
In item Other Images:
Dependency 1: Realign: Estimate & Reslice/Unwarp: Realigned Images (Sess 1) (out.sess(1).uwrfiles)
'/Volumes/PAUL/datalad/analysis_high-res_BLAM_biMotion_localizers/outputs/derivatives/bidspm-preproc/sub-SC08/ses-02/func/usub-SC08_ses-02_task-auditoryLocalizer_run-02_part-mag_space-individual_desc-stc_bold.nii'
Dependency 2: Realign: Estimate & Reslice/Unwarp: Realigned Images (Sess 2) (out.sess(2).uwrfiles)
sess: [1×1 struct]
meanuwr: {'/Volumes/PAUL/datalad/analysis_high-res_BLAM_biMotion_localizers/outputs/derivatives/bidspm-preproc/sub-SC08/ses-02/func/meanusub-SC08_ses-02_task-auditoryLocalizer_run-02_part-mag_space-individual_desc-stc_bold.nii'}Batch
here it is expecting 2 other images (2 runs but I selected only one through the session filter)
matlabbatch{3}.spm.spatial.coreg.estimate.other(1) = cfg_dep('Realign: Estimate & Reslice/Unwarp: Realigned Images (Sess 1)', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{1}, '.','uwrfiles'));
matlabbatch{3}.spm.spatial.coreg.estimate.other(2) = cfg_dep('Realign: Estimate & Reslice/Unwarp: Realigned Images (Sess 2)', substruct('.','val', '{}',{2}, '.','val', '{}',{1}, '.','val', '{}',{1}, '.','val', '{}',{1}), substruct('.','sess', '()',{2}, '.','uwrfiles'));Anything else?
No rush, my workaround was to delete in raw the run I don't need (which is to discard anyway).
More pointers for solutions:
- Have a filter for run
- Be smarter that if a user select a session, metadata from other sessions are not considered in the batch