add ADMIXTURE example into factor analysis. remove CFA. redo PCA notebook accordingly. #4
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Create new notebook covering HMM theory and applications in statistical genetics with three detailed examples: 1. Basic HMM (casino dice) with forward and Viterbi algorithms 2. Local ancestry inference inspired by ELAI 3. Genotype imputation using Li-Stephens model Includes complete R implementations with visualizations and detailed explanations of key concepts.
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@gaow I redid the factor analysis and PCA as we discussed. Also the yaml file to adapt to the Jupyter-book 2.0 version. |
gaow
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Nov 15, 2025
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