Commits

Commit history

1. Commits on Aug 13, 2025

   • fixsplit_kmer.rs

     Paururo

     authored
     f7194e5View commit details

     Copy full SHA for f7194e5

     View code at this pointBrowse repository at this point
2. Commits on Jul 30, 2025

   • add nested classification

     Paururo

     authored
     2b9c648View commit details

     Copy full SHA for 2b9c648

     View code at this pointBrowse repository at this point

   • add nested classification

     Paururo

     authored
     6ffee38View commit details

     Copy full SHA for 6ffee38

     View code at this pointBrowse repository at this point
3. Commits on Jul 12, 2025

   • chg v

     Paururo

     authored
     140abcfView commit details

     Copy full SHA for 140abcf

     View code at this pointBrowse repository at this point

   • add match

     Paururo

     authored
     f3c9dc7View commit details

     Copy full SHA for f3c9dc7

     View code at this pointBrowse repository at this point

   • improve kmers

     Paururo

     authored
     a4ebae4View commit details

     Copy full SHA for a4ebae4

     View code at this pointBrowse repository at this point
4. Commits on Jul 11, 2025

   • add counting votes

     Paururo

     authored
     7a81cc9View commit details

     Copy full SHA for 7a81cc9

     View code at this pointBrowse repository at this point
5. Commits on Jul 10, 2025

   • improve errors

     Paururo

     authored
     a923b8dView commit details

     Copy full SHA for a923b8d

     View code at this pointBrowse repository at this point

   • Update classify.rs

     Paururo

     authored
     53804e3View commit details

     Copy full SHA for 53804e3

     View code at this pointBrowse repository at this point
6. Commits on Jul 9, 2025

   • Update classify.rs to gff annot

     Paururo

     authored
     95c5fcbView commit details

     Copy full SHA for 95c5fcb

     View code at this pointBrowse repository at this point
7. Commits on Jul 6, 2025

   • Update classify_split_fastq.rs to indels and MNV

     Paururo

     authored
     5860832View commit details

     Copy full SHA for 5860832

     View code at this pointBrowse repository at this point

   • Update classify.rs to indels and MNV

     Paururo

     authored
     197394fView commit details

     Copy full SHA for 197394f

     View code at this pointBrowse repository at this point

   • Update split_kmer.rs to indels and MNV

     Paururo

     authored
     569f6c7View commit details

     Copy full SHA for 569f6c7

     View code at this pointBrowse repository at this point
8. Commits on Jul 5, 2025

   • Create classify_split_fastq.rs

     Paururo

     authored
     11f9a73View commit details

     Copy full SHA for 11f9a73

     View code at this pointBrowse repository at this point

   • Update train.rs

     Paururo

     authored
     43f7828View commit details

     Copy full SHA for 43f7828

     View code at this pointBrowse repository at this point

   • Update classify.rs

     Paururo

     authored
     cf09b9fView commit details

     Copy full SHA for cf09b9f

     View code at this pointBrowse repository at this point

   • Update predict.rs

     Paururo

     authored
     46bdbc8View commit details

     Copy full SHA for 46bdbc8

     View code at this pointBrowse repository at this point

   • Create split_kmer.rs

     Paururo

     authored
     9597867View commit details

     Copy full SHA for 9597867

     View code at this pointBrowse repository at this point

   • Update main.rs

     Paururo

     authored
     5016d54View commit details

     Copy full SHA for 5016d54

     View code at this pointBrowse repository at this point
9. Commits on Feb 8, 2025

   • feat: implement summary generation for lineage counts in classify subcommand

     Paururo

     committed
     287be53View commit details

     Copy full SHA for 287be53

     View code at this pointBrowse repository at this point

   • feat: add k-mer size option and output summary file generation

     Paururo

     committed
     1d09e5dView commit details

     Copy full SHA for 1d09e5d

     View code at this pointBrowse repository at this point

   • update default k-mer size in training arguments from 21 to 6

     Paururo

     committed
     be93769View commit details

     Copy full SHA for be93769

     View code at this pointBrowse repository at this point

   • enhance CLI documentation for Pathotypr tool with detailed subcommand descriptions and author information

     Paururo

     committed
     451199fView commit details

     Copy full SHA for 451199f

     View code at this pointBrowse repository at this point

   • remove

     Paururo

     committed
     0414e70View commit details

     Copy full SHA for 0414e70

     View code at this pointBrowse repository at this point

   • add main and predict modules for genome classification tool with CLI support

     Paururo

     committed
     65e7d5aView commit details

     Copy full SHA for 65e7d5a

     View code at this pointBrowse repository at this point

   • add initial implementation for prediction module with k-mer processing and model loading

     Paururo

     committed
     619e50bView commit details

     Copy full SHA for 619e50b

     View code at this pointBrowse repository at this point

   • update default k-mer size from 5 to 6 in main.rs and main_train.rs

     Paururo

     committed
     5fabb53View commit details

     Copy full SHA for 5fabb53

     View code at this pointBrowse repository at this point

   • update default k-mer size from 4 to 5 in main.rs and main_train.rs

     Paururo

     committed
     3816045View commit details

     Copy full SHA for 3816045

     View code at this pointBrowse repository at this point

   • update default k-mer size from 21 to 4 in main.rs

     Paururo

     committed
     8fb104fView commit details

     Copy full SHA for 8fb104f

     View code at this pointBrowse repository at this point

   • add GenomeSequence and Lineage structs with validation

     Paururo

     committed
     b79a851View commit details

     Copy full SHA for b79a851

     View code at this pointBrowse repository at this point

   • Refactor and simplify GenomeSequence and Lineage structs; enhance k-mer size handling in prediction logic

     Paururo

     committed
     fa50686View commit details

     Copy full SHA for fa50686

     View code at this pointBrowse repository at this point

   • Add initial implementation of prediction tool with command-line interface and k-mer processing

     Paururo

     committed
     dd0e567View commit details

     Copy full SHA for dd0e567

     View code at this pointBrowse repository at this point

   • Add Cargo.toml for project dependencies and configuration

     Paururo

     committed
     b7704b3View commit details

     Copy full SHA for b7704b3

     View code at this pointBrowse repository at this point

   • clean up main function formatting

     Paururo

     committed
     83ca675View commit details

     Copy full SHA for 83ca675

     View code at this pointBrowse repository at this point

   • Change default k-mer size to 4 and update chrono import

     Paururo

     committed
     b361e5eView commit details

     Copy full SHA for b361e5e

     View code at this pointBrowse repository at this point