drop cellchat dependencies #131
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3 errors and 11 warnings
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Run neurogenomics/rworkflows@master
Package suggested but not available: ‘SeuratDisk’
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Run neurogenomics/rworkflows@master
R CMD check found ERRORs
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
harfbuzz 9.0.0 is already installed and up-to-date.
To reinstall 9.0.0, run:
brew reinstall harfbuzz
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Run neurogenomics/rworkflows@master
fribidi 1.0.15 is already installed and up-to-date.
To reinstall 1.0.15, run:
brew reinstall fribidi
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Run neurogenomics/rworkflows@master
macOS's Gatekeeper has been disabled for this Cask
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Run neurogenomics/rworkflows@master
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
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Run neurogenomics/rworkflows@master
replacing previous import ‘broom::tidy’ by ‘tidySingleCellExperiment::tidy’ when loading ‘HPCell’
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Run neurogenomics/rworkflows@master
replacing previous import ‘tidySingleCellExperiment::tidy’ by ‘tidySummarizedExperiment::tidy’ when loading ‘HPCell’
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Run neurogenomics/rworkflows@master
replacing previous import ‘tidySummarizedExperiment::tidy’ by ‘tidyseurat::tidy’ when loading ‘HPCell’
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Run neurogenomics/rworkflows@master
replacing previous import ‘tidySingleCellExperiment::join_transcripts’ by ‘tidyseurat::join_transcripts’ when loading ‘HPCell’
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Run neurogenomics/rworkflows@master
replacing previous import ‘broom::tidy’ by ‘tidySingleCellExperiment::tidy’ when loading ‘HPCell’
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Run neurogenomics/rworkflows@master
replacing previous import ‘tidySingleCellExperiment::tidy’ by ‘tidySummarizedExperiment::tidy’ when loading ‘HPCell’
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-release-r-auto-results", "Windows-biocversion-release-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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