move use_visc_readme back to original location

NEWS.md

@@ -9,7 +9,7 @@ Other improvements
 * Update PT report naming practices to the format VDCnnn_assay_PTreport_interim/final_(un)blinded.Rmd (#202)
 * Add auxiliary files to template .gitignore (.aux, .toc, .lof, .lot, .out, cache files, and .smbdelete files) (#230)
 * README.md files are now created at the assay folder level at the time of calling use_visc_report() (#233)
-* inst/ folder within package has been reorganized for clarity (#233)
+* Reorganized inst/ folder within package for clarity (#233)
 
 # VISCtemplates 1.3.2
 

R/create_visc_project.R

@@ -1,38 +1,3 @@
-#' Use a VISC README template
-#'
-#' @param study_name name of study in VDCNNN format
-#' @param save_as where to save README.Rmd. Defaults to top-level.
-#'
-#' @export
-#'
-#' @examples
-#' \dontrun{
-#' use_visc_readme("Gallo477")
-#' }
-use_visc_readme <- function(study_name, save_as = "README.Rmd") {
-  usethis::use_template(
-    template = "README_visc_project.Rmd",
-    save_as = save_as,
-    data = list(study_name = study_name),
-    package = "VISCtemplates"
-  )
-  # knit the md from the Rmd on request of SRA team
-  rmarkdown::render(
-    usethis::proj_path('README.Rmd'),
-    quiet = TRUE
-  )
-  # remove Rmd at request of SRA team; they just manually edit the *.md
-  # so the Rmd file merely clutters their working directory
-  unlink(
-    usethis::proj_path(
-      paste0(
-        'README',
-        c('.Rmd', '.html')
-      )
-    )
-  )
-}
-
 #' Create a VISC project
 #'
 #' Creates a new R project with a VISC analysis project structure.

R/use_visc_report.R

@@ -1,3 +1,38 @@
+#' Use a VISC README template
+#'
+#' @param study_name name of study in VDCNNN format
+#' @param save_as where to save README.Rmd. Defaults to top-level.
+#'
+#' @export
+#'
+#' @examples
+#' \dontrun{
+#' use_visc_readme("Gallo477")
+#' }
+use_visc_readme <- function(study_name, save_as = "README.Rmd") {
+  usethis::use_template(
+    template = "README_visc_project.Rmd",
+    save_as = save_as,
+    data = list(study_name = study_name),
+    package = "VISCtemplates"
+  )
+  # knit the md from the Rmd on request of SRA team
+  rmarkdown::render(
+    usethis::proj_path('README.Rmd'),
+    quiet = TRUE
+  )
+  # remove Rmd at request of SRA team; they just manually edit the *.md
+  # so the Rmd file merely clutters their working directory
+  unlink(
+    usethis::proj_path(
+      paste0(
+        'README',
+        c('.Rmd', '.html')
+      )
+    )
+  )
+}
+
 #' Create a VISC docs directory with template files
 #'
 #' Creates the docs/ directory and presentations/ directory with templates