update to alpaka pre-0.4.0 version #2958

psychocoderHPC · 2019-05-09T15:37:31Z

updated version of #2807 to verify issues before we release a new alpaka version

update Cupla from :ComputationalRadiationPhysics/cupla@73fb269 to ComputationalRadiationPhysics/cupla@a96b293

GIT_AUTHOR_NAME="Third Party" GIT_AUTHOR_EMAIL="picongpu@hzdr.de" git subtree pull --prefix thirdParty/cupla git@github.com:ComputationalRadiationPhysics/cupla.git dev --squash

update alpaka from ComputationalRadiationPhysics/alpaka@b5c66c2 to ComputationalRadiationPhysics/alpaka@6b42f89

GIT_AUTHOR_NAME="Third Party" GIT_AUTHOR_EMAIL="picongpu@hzdr.de" \
  git subtree pull --prefix thirdParty/alpaka \                                                  
  git@github.com:ComputationalRadiationPhysics/alpaka.git develop --squash

psychocoderHPC · 2019-05-09T15:48:42Z

@ax3l Do you see why the CI is not checking my PR. I have currently no access to the CI node and can not check it by myself :-(

psychocoderHPC · 2019-05-10T09:02:56Z

We need to check the cmake version of our CI because travis is also showing that we are using an to old cmake https://travis-ci.org/ComputationalRadiationPhysics/picongpu/jobs/530345749#L812

psychocoderHPC · 2019-05-10T12:06:32Z

Note: The problem why the CI is not showing any error is that the error log is 12MiB and this is too large.
In general local tests show that we still have the issue with cuda8 and this PR what we already observed in #2807.
We need to switch to CUDA 9.X for this PR. Some examples still run with CUDA8 so we should not forbid the usage but should remove support for this version.

ax3l · 2019-05-10T12:59:21Z

That's ok with me to go for cuda 9+ with PIConGPU 0.5.0/1.0.0

git-subtree-dir: thirdParty/alpaka git-subtree-split: 6b42f89204a6800a926b36f07d8fd2908892378e

…pakaAndCuplaUpdate

a96b293 Merge pull request ComputationalRadiationPhysics#106 from fwyzard/cupla_accelerator_namespace 1af2b2b Merge pull request ComputationalRadiationPhysics#110 from tdd11235813/cmake-macro 663521c Changes function to macro 'CUPLA_ADD_EXECUTABLE'. a440a7c Fix namespace definition if two accelerators are selected 64f02bb Move all accelerator-specific code to an inline namespece bbef699 Merge pull request ComputationalRadiationPhysics#105 from fwyzard/tbb_IsThreadSeqAcc b463a25 Mark the TBB backend as "thread sequential" b45d4e9 Merge pull request ComputationalRadiationPhysics#102 from psychocoderHPC/topic-updateToLatestAlapkaDev 7e8b832 createTaskExec -> createTaskKernel 84b6dc1 update to latest alapka develop branch 037f7b2 Merge pull request ComputationalRadiationPhysics#100 from DerWaldschrat/dev 7add5ed fix -Wreorder in cuplaPitchedPtr (#4) 9fa745b Merge pull request ComputationalRadiationPhysics#99 from ax3l/topic-cmake312rootHints 041d454 Merge pull request ComputationalRadiationPhysics#98 from DerWaldschrat/dev-fix ecc5839 CMake: Honor _ROOT Env Hints 24d159a Added conditional check for backends. 5822555 Add cudaEventBlockingSync to event creation 906cd41 Merge pull request ComputationalRadiationPhysics#97 from psychocoderHPC/topic-HIPBackend bc67259 alpaka backend: HIP 87fe58d Merge pull request ComputationalRadiationPhysics#96 from psychocoderHPC/fix-kernelSharedMemCalc 68877b5 fix dynamic shared mem definition 9452a70 Merge pull request ComputationalRadiationPhysics#95 from psychocoderHPC/topic-updateDocs 8b26918 update docs e822bfa Merge pull request ComputationalRadiationPhysics#89 from psychocoderHPC/topic-switchToAlpakaDevelop0.4.X 50cedbc alpaka renamings + cmake version incerase 5ecd227 update to alapka dev upcoming version 0.4.X 66a9240 Merge pull request ComputationalRadiationPhysics#94 from psychocoderHPC/topic-ciUpdateToCUDA8 3ba6104 CI: update CUDA from 7.5 to 8.0 5af56ce Merge pull request ComputationalRadiationPhysics#93 from psychocoderHPC/topic-updateCIToClang4 68a6555 Travis: CUDA Compiler Ignore 279bfd0 Travis: Xenial 9d583b7 CI: switch from clan 3.5 to 4.0 11eb874 Merge pull request ComputationalRadiationPhysics#92 from ax3l/topic-ciCMake3110 da617da Travis: CMake 3.11.0 da63524 Merge pull request ComputationalRadiationPhysics#91 from ComputationalRadiationPhysics/dev 66a2da7 Merge pull request ComputationalRadiationPhysics#88 from psychocoderHPC/topic-versionIncreaseTo0.1.1 e029584 version increase to 0.1.1 ffdb268 Merge pull request ComputationalRadiationPhysics#90 from psychocoderHPC/fix-tbbSelection 06030af fix TBB backend activation aa8a921 Merge pull request ComputationalRadiationPhysics#84 from psychocoderHPC/topic-cuplaGetErrorString 55c99b7 add implementation for `cuplaGetErrorString` c765052 Merge pull request ComputationalRadiationPhysics#86 from psychocoderHPC/topic-cuplaPeekAtLastError 49612bb Merge pull request ComputationalRadiationPhysics#87 from psychocoderHPC/topic-helpUpdatecuplaGetLastError c763de4 Merge pull request ComputationalRadiationPhysics#85 from psychocoderHPC/topic-cuplaStreamQuerySupport 5d19923 update documentation of `cuplaGetLastError` 3806b8f implement `cuplaPeekAtLastError()` 2e79816 add `cuplaStreamQuery()` 7c73dc8 Merge pull request ComputationalRadiationPhysics#83 from psychocoderHPC/fix-cuplaGetLastError b02299a fix `cuplaGetLastError` 1b7d7ea Merge pull request ComputationalRadiationPhysics#81 from tdd11235813/master b0adfd9 Updates alpaka to 0.3.5. git-subtree-dir: thirdParty/cupla git-subtree-split: a96b293dcb14662a57901b55dfedaa1cd615adc9

psychocoderHPC · 2019-05-20T08:18:26Z

Since the CI is not showing the full error I run the test manually on the CI node:

In file included from /tmp/tmpxft_00006220_00000000-5_main.cudafe1.stub.c:5:0,
                 from tmpxft_00006220_00000000-5_main.cudafe1.stub.c:1:
/tmp/tmpxft_00006220_00000000-5_main.cudafe1.stub.c: In function ‘void __device_stub__ZN6alpaka6kernel4cuda6detail10cudaKernelISt17integral_constantImLm3EEjN5cupla16cupla_cuda_async11CuplaKernelIN8picongpu21KernelEnergyParticlesILj256EEEEEJN5pmacc12ParticlesBoxINSD_5FrameINSD_15ParticlesBufferINSD_19ParticleDescriptionINSD_11compileTime6StringIJLc101ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0EEEENSD_4math2CT6VectorIN4mpl_10integral_cIiLi8EEESQ_NSP_IiLi4EEEEEN5boost3mpl6v_itemINS9_24placeholder_definition309weightingENSV_INS9_24placeholder_definition288momentumENSV_INS9_24placeholder_definition258positionINS9_24placeholder_definition2712position_picENSD_24placeholder_definition2213pmacc_isAliasEEENSU_7vector0INSO_2naEEELi0EEELi0EEELi0EEENSV_INS9_24placeholder_definition5111chargeRatioINS9_25placeholder_definition13120ChargeRatioElectronsES15_EENSV_INS9_24placeholder_definition509massRatioINS9_25placeholder_definition13018MassRatioElectronsES15_EENSV_INS9_24placeholder_definition467currentINS9_13currentSolver9EsirkepovINS9_9particles6shapes3CICELj3EEES15_EENSV_INS9_24placeholder_definition4513interpolationINS9_28FieldToParticleInterpolationIS1T_NS9_30AssignedTrilinearInterpolationEEES15_EENSV_INS9_24placeholder_definition385shapeIS1T_S15_EENSV_INS9_24placeholder_definition3914particlePusherINS1R_6pusher5BorisES15_EES19_Li0EEELi0EEELi0EEELi0EEELi0EEELi0EEENSD_17HandleGuardRegionINSD_9particles8policies17ExchangeParticlesENS1R_8boundary29CallPluginsAndDeleteParticlesEEES19_S19_EESS_N8mallocMC9AllocatorINS2O_16CreationPolicies7ScatterINS9_16DeviceHeapConfigENS2Q_11ScatterConf27DefaultScatterHashingParamsEEENS2O_20DistributionPolicies4NoopENS2O_11OOMPolicies10ReturnNullENS2O_19ReservePoolPolicies16SimpleCudaMallocENS2O_17AlignmentPolicies6ShrinkINS32_12ShrinkConfig19DefaultShrinkConfigEEEEELj3EE29OperatorCreatePairStaticArrayILj256EEENSH_ISK_SS_NSV_INSD_24placeholder_definition249multiMaskENSV_INSD_24placeholder_definition2312localCellIdxES1C_Li0EEELi0EEES2F_S2M_S19_NSV_INSD_12NextFramePtrINSO_3argILi1EEEEENSV_INSD_16PreviousFramePtrIS3J_EES19_Li0EEELi0EEEEEEENS2O_19AllocatorHandleImplIS37_EELj3EEENSD_7DataBoxINSD_10PitchedBoxIdLj1EEEEENSD_11AreaMappingILj3ENSD_18MappingDescriptionILj3ESS_EEEENSD_7functor9InterfaceINS1R_6filter3AllELj1EbEEEEEvNS_3vec3VecIT_T0_EET1_DpT2_(const _ZN6alpaka3vec3VecISt17integral_constantImLm3EEjEE&, const _ZN5cupla16cupla_cuda_async11CuplaKernelIN8picongpu21KernelEnergyParticlesILj256EEEEE&, _ZN5pmacc13ParticlesBaseINS_19ParticleDescriptionINS_11compileTime6StringIJLc101ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0ELc0EEEENS_4math2CT6VectorIN4mpl_10integral_cIiLi8EEESA_NS9_IiLi4EEEEEN5boost3mpl6v_itemIN8picongpu24placeholder_definition309weightingENSF_INSG_24placeholder_definition288momentumENSF_INSG_24placeholder_definition258positionINSG_24placeholder_definition2712position_picENS_24placeholder_definition2213pmacc_isAliasEEENSE_7vector0INS8_2naEEELi0EEELi0EEELi0EEENSF_INSG_24placeholder_definition5111chargeRatioINSG_25placeholder_definition13120ChargeRatioElectronsESQ_EENSF_INSG_24placeholder_definition509massRatioINSG_25placeholder_definition13018MassRatioElectronsESQ_EENSF_INSG_24placeholder_definition467currentINSG_13currentSolver9EsirkepovINSG_9particles6shapes3CICELj3EEESQ_EENSF_INSG_24placeholder_definition4513interpolationINSG_28FieldToParticleInterpolationIS1E_NSG_30AssignedTrilinearInterpolationEEESQ_EENSF_INSG_24placeholder_definition385shapeIS1E_SQ_EENSF_INSG_24placeholder_definition3914particlePusherINS1C_6pusher5BorisESQ_EESU_Li0EEELi0EEELi0EEELi0EEELi0EEELi0EEENS_17HandleGuardRegionINS_9particles8policies17ExchangeParticlesENS1C_8boundary29CallPluginsAndDeleteParticlesEEESU_SU_EENS_18MappingDescriptionILj3ESC_EEN8mallocMC9AllocatorINS2B_16CreationPolicies7ScatterINSG_16DeviceHeapConfigENS2D_11ScatterConf27DefaultScatterHashingParamsEEENS2B_20DistributionPolicies4NoopENS2B_11OOMPolicies10ReturnNullENS2B_19ReservePoolPolicies16SimpleCudaMallocENS2B_17AlignmentPolicies6ShrinkINS2P_12ShrinkConfig19DefaultShrinkConfigEEEEEE16ParticlesBoxTypeE&, _ZN5pmacc7DataBoxINS_10PitchedBoxIdLj1EEEEE&, _ZN5pmacc11AreaMappingILj3ENS_18MappingDescriptionILj3ENS_4math2CT6VectorIN4mpl_10integral_cIiLi8EEES7_NS6_IiLi4EEEEEEEEE&, _ZNSt3_MuISt12_PlaceholderILi1EELb0ELb1EE6resultIFS2_S1_St5tupleIJN5pmacc7functor9InterfaceIN8picongpu9particles6filter3AllELj1EbEEEEEE11__base_typeE&)’:
/tmp/tmpxft_00006220_00000000-5_main.cudafe1.stub.c:995:4921: error: invalid application of ‘sizeof’ to incomplete type ‘_ZNSt3_MuISt12_PlaceholderILi1EELb0ELb1EE6resultIFS2_S1_St5tupleIJN5pmacc7functor9InterfaceIN8picongpu9particles6filter3AllELj1EbEEEEEE11__base_typeE {aka _ZN5pmacc7functor9InterfaceIN8picongpu9particles6filter3AllELj1EbEE}’

human readable with c++file:

incomplete type: std::_Mu<std::_Placeholder<1>, false, true>::result<std::_Mu<std::_Placeholder<1>, false, true> (std::_Placeholder<1>, std::tuple<pmacc::functor::Interface<picongpu::particles::filter::All, 1u, bool> >)>::__base_type 
aka
pmacc::functor::Interface<picongpu::particles::filter::All, 1u, bool>

psychocoderHPC · 2019-05-20T09:42:37Z

Test failed with CUDA 9.0 and 9.1. :-(
CUDA 9.2 works fine.

psychocoderHPC · 2019-06-03T08:08:30Z

Tested CUDA 10.1: compile without issues

 ...........,_
 ........../.(|
 ..........\..\ 
 ........___\..\,. ~~~~~~
 .......(__)_)...\ 
 ......(__)__)|...|
 ......(__)__)|.__|
 .......(__)__)___/~~~~~~

…pakaAndCuplaUpdate

psychocoderHPC · 2019-06-07T09:39:40Z

@ax3l As discussed please merge this PR as it is even if we not update directly to the latest version of alpaka and cupla. Do to the renamings in the libraries there was some hand work needed to solve merge conflicts (I checked my changes against a clean checkout of the corresponding library)

ax3l · 2019-06-07T12:38:20Z

CI and project updated to only support CUDA 9.2 or newer in #2975

psychocoderHPC force-pushed the topic-alpakaAndCuplaUpdate branch from a9a8752 to ba91e09 Compare May 9, 2019 15:41

psychocoderHPC added the component: third party third party libraries that are shipped and/or linked label May 10, 2019

psychocoderHPC added this to the 0.5.0 / 1.0.0: Next Stable milestone May 10, 2019

psychocoderHPC force-pushed the topic-alpakaAndCuplaUpdate branch 2 times, most recently from daa39d6 to ff2aa27 Compare May 17, 2019 12:28

Apply changes to work with alpaka develop

aee7333

psychocoderHPC force-pushed the topic-alpakaAndCuplaUpdate branch from ff2aa27 to aee7333 Compare May 17, 2019 13:34

Third Party and others added 3 commits May 17, 2019 17:17

Squashed 'thirdParty/alpaka/' changes from b5c66c2..6b42f89

92ea350

git-subtree-dir: thirdParty/alpaka git-subtree-split: 6b42f89204a6800a926b36f07d8fd2908892378e

Merge commit '92ea3504cdc01a8ba4383b5c62694438be296a36' into topic-al…

c6b1b85

…pakaAndCuplaUpdate

This was referenced May 17, 2019

[WIP] Alpaka develop (pre-0.4.0) #2807

Closed

Prepare release 0.4.0 alpaka-group/alpaka#778

Closed

psychocoderHPC force-pushed the topic-alpakaAndCuplaUpdate branch from b90b699 to abdf575 Compare June 5, 2019 08:43

Merge commit 'c98c0a0f97777c081a3b0239c97e6f2f3dde9eeb' into topic-al…

a933e55

…pakaAndCuplaUpdate

psychocoderHPC force-pushed the topic-alpakaAndCuplaUpdate branch from abdf575 to a933e55 Compare June 6, 2019 14:35

psychocoderHPC changed the title ~~[WIP] update to alpaka pre-0.4.0 version~~ update to alpaka pre-0.4.0 version Jun 7, 2019

psychocoderHPC requested a review from ax3l June 7, 2019 09:37

psychocoderHPC assigned ax3l Jun 7, 2019

ax3l merged commit de75529 into ComputationalRadiationPhysics:dev Jun 7, 2019

psychocoderHPC mentioned this pull request Jul 31, 2019

FoilLCT: runtime error #3010

Closed

ax3l mentioned this pull request Jan 8, 2020

Build and run errors #3135

Closed

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

update to alpaka pre-0.4.0 version #2958

update to alpaka pre-0.4.0 version #2958

psychocoderHPC commented May 9, 2019 •

edited by sbastrakov

Loading

psychocoderHPC commented May 9, 2019

psychocoderHPC commented May 10, 2019

psychocoderHPC commented May 10, 2019 •

edited

Loading

ax3l commented May 10, 2019 via email •

edited

Loading

psychocoderHPC commented May 20, 2019 •

edited

Loading

psychocoderHPC commented May 20, 2019 •

edited

Loading

psychocoderHPC commented Jun 3, 2019

psychocoderHPC commented Jun 7, 2019

ax3l commented Jun 7, 2019

update to alpaka pre-0.4.0 version #2958

update to alpaka pre-0.4.0 version #2958

Conversation

psychocoderHPC commented May 9, 2019 • edited by sbastrakov Loading

psychocoderHPC commented May 9, 2019

psychocoderHPC commented May 10, 2019

psychocoderHPC commented May 10, 2019 • edited Loading

ax3l commented May 10, 2019 via email • edited Loading

psychocoderHPC commented May 20, 2019 • edited Loading

psychocoderHPC commented May 20, 2019 • edited Loading

psychocoderHPC commented Jun 3, 2019

psychocoderHPC commented Jun 7, 2019

ax3l commented Jun 7, 2019

psychocoderHPC commented May 9, 2019 •

edited by sbastrakov

Loading

psychocoderHPC commented May 10, 2019 •

edited

Loading

ax3l commented May 10, 2019 via email •

edited

Loading

psychocoderHPC commented May 20, 2019 •

edited

Loading

psychocoderHPC commented May 20, 2019 •

edited

Loading