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MICCAI-OpenSourcePapers

MICCAI 2021 Open Source Papers

We use "Link to the code repository" in MICCAI2021 Openreview as the keyword to retrieve the open-source papers. Please feel free to pull requests for the unlisted open-source articles.

Title Code
2.5D Thermometry Maps for MRI-guided Tumor Ablation Code
2D Histology Meets 3D Topology: Cytoarchitectonic Brain Mapping with Graph Neural Networks Code
3D-UCaps: 3D Capsules Unet for Volumetric Image Segmentation Code
4D-Foot: A fully automated pipeline of four-dimensional analysis of the foot bones using bi-plane X-ray video and CT Code
A computational geometry approach for modeling neuronal fiber pathways Code
A Deep Discontinuity-Preserving Image Registration Network Code
A Deep Learning Bidirectional Temporal Tracking Algorithm for Automated Blood Cell Counting from Non-invasive Capillaroscopy Videos Code
A Deep Network for Joint Registration and Parcellation of Cortical Surfaces Code
A Deep Reinforced Tree-traversal Agent for Coronary Artery Centerline Extraction Code
A Hierarchical Feature Constraint to CamouflageMedical Adversarial Attacks Code
A Matrix Auto-encoder Framework to Align the Functional and Structural Connectivity Manifolds as Guided by Behavioral Phenotypes Code
A Neural Framework for Multi-Variable Lesion Quantification Through B-mode Style Transfer Code
A new Approach to Orthopedic Surgery Planning using Deep Reinforcement Learning and Simulation Code
A Principled Approach to Failure Analysis and Model Repairment: Demonstration in Medical Imaging Code
A Spatial Guided Self-supervised Clustering Network for Medical Image Segmentation Code
A spherical convolutional neural network for white matter structure imaging via diffusion MRI Code
A Structural Causal Model MR Images of Multiple Sclerosis Code
A Topological-Attention ConvLSTM Network and Its Application to EM Images Code
ACN: Adversarial Co-training Network for Brain Tumor Segmentation with Missing Modalities Code
Acoustic-based Spatio-temporal Learning for Press-fit Evaluation of Femoral Stem Implants Code
Adversarial learning of cancer tissue representations Code
Airway Anomaly Detection by Graph Neural Network Code
AMINN: Autoencoder-based Multiple Instance Neural Network Improves Outcome Prediction of Multifocal Liver Metastases Code
Anatomy of Domain Shift Impact on U-Net Layers in MRI Segmentation Code
Anatomy-Constrained Contrastive Learning for Synthetic Segmentation without Ground-truth Code
AnaXNet: Anatomy Aware Multi-label Finding Classification in Chest X-ray Code
Annotation-efficient Cell Counting Code
ASC-Net: Adversarial-based Selective Network for Unsupervised Anomaly Segmentation Code
Asymmetric 3D Context Fusion for Universal Lesion Detection Code
AtrialGeneral: Domain Generalization for Left Atrial Segmentation of Multi-Center LGE MRIs Code
Attention-based Multi-scale Gated Recurrent Encoder with Novel Correlation Loss for COVID-19 Progression Prediction Code
Automatic Polyp Segmentation via Multi-scale Subtraction Network Code
Automating Embryo Development Stage Detection in Time-Lapse Imaging with Synergic Loss and Temporal Learning Code
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions Code
Balanced-MixUp for highly imbalanced medical image classification Code
Bayesian Atlas Building with Hierarchical Priors for Subject-specific Regularization Code
Boundary-aware Transformers for Skin Lesion Segmentation Code
Bounding Box Tightness Prior for Weakly Supervised Image Segmentation Code
BSDA-Net: A Boundary Shape and Distance Aware Joint Learning Framework for Segmenting and Classifying OCTA Images Code
CarveMix: A Simple Data Augmentation Method for Brain Lesion Segmentation Code
CataNet: Predicting remaining cataract surgery duration Code
Categorical Relation-Preserving Contrastive Knowledge Distillation for Medical Image Classification Code
CCBANet: Cascading Context and Balancing Attention for Polyp Segmentation Code
Cell Detection from Imperfect Annotation by Pseudo Label Selection Using P-classification Code
Cell Detection in Domain Shift Problem Using Pseudo-Cell-Position Heatmap Code
Cells are Actors: Social Network Analysis with Classical ML for SOTA Histology Image Classification Code
Chest Radiograph Disentanglement for COVID-19 Outcome Prediction Code
Class-Incremental Domain Adaptation with Smoothing and Calibration for Surgical Report Generation Code
Coarse-to-fine Segmentation of Organs at Risk in Nasopharyngeal Carcinoma Radiotherapy Code
Co-Generation and Segmentation for Generalized Surgical Instrument Segmentation on Unlabelled Data Code
Colorectal Polyp Classification from White-light Colonoscopy Images via Domain Alignment Code
Combining 3D Image and Tabular Data via the Dynamic Affine Feature Map Transform Code
Combining Attention-based Multiple Instance Learning and Gaussian Processes for CT Hemorrhage Detection Code
Comprehensive Importance-based Selective Regularization for Continual Segmentation Across Multiple Sites Code
Conditional Deformable Image Registration with Convolutional Neural Network Code
Conditional GAN with an Attention-based Generator and a 3D Discriminator for 3D Medical Image Generation Code
Constrained Contrastive Distribution Learning for Unsupervised Anomaly Detection and Localisation in Medical Images Code
Continuous-Time Deep Glioma Growth Models Code
Contrastive Learning of Relative Position Regression for One-Shot Object Localization in 3D Medical Images Code
Contrastive Learning with Continuous Proxy Meta-Data For 3D MRI Classification Code
Contrastive Pre-training and Representation Distillation for Medical Visual Question Answering Based on Radiology Images Code
Controllable cardiac synthesis via disentangled anatomy arithmetic Code
Cooperative Training and Latent Space Data Augmentation for Robust Medical Image Segmentation Code
CoTr: Efficiently Bridging CNN and Transformer for 3D Medical Image Segmentation Code
Cross-modal Attention for MRI and Ultrasound Volume Registration Code
Data-driven mapping between functional connectomes using optimal transport Code
Deep J-Sense: Accelerated MRI Reconstruction via Unrolled Alternating Optimization Code
Deep Neural Dynamic Bayesian Networks applied to EEG sleep spindles modeling Code
DeepMitral: Fully Automatic 3D Echocardiography Segmentation for Patient Specific Mitral Valve Modelling Code
DeepOPG: Improving Orthopantomogram Finding Summarization with Weak Supervision Code
Deformed2Self: Self-Supervised Denoising for Dynamic Medical Imaging Code
Depth Estimation for Colonoscopy Images with Self-supervised Learning from Videos Code
Detecting Outliers with Poisson Image Interpolation Code
Detecting when pre-trained nnU-Net models fail silently for Covid-19 lung lesion segmentation Code
Developmental Stage Classification of Embryos Using Two-Stream Neural Network with Linear-Chain Conditional Random Field Code
Distilling effective supervision for robust medical image segmentation with noisy labels Code
Distinguishing Differences Matters: Focal Contrastive Network for Peripheral Anterior Synechiae Recognition Code
Distortion Energy for Deep Learning-based Volumetric Finite Element Mesh Generation for Aortic Valves Code
Domain Composition and Attention for Unseen-Domain Generalizable Medical Image Segmentation Code
DT-MIL: Deformable Transformer for Multi-instance Learning on Histopathological Image Code
Dual-Consistency Semi-Supervised Learning with Uncertainty Quantification for COVID-19 Lesion Segmentation from CT Images Code
Dual-Domain Adaptive-Scaling Non-Local Network for CT Metal Artifact Reduction Code
Duo-SegNet: Adversarial Dual-Views for Semi-Supervised Medical Image Segmentation Code
Early Detection of Liver Fibrosis Using Graph Convolutional Networks Code
Effective semantic segmentation in Cataract surgery: What matters most? Code
Efficient Global-Local Memory for Real-time Instrument Segmentation of Robotic Surgical Video Code
Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data Code
Efficient Semi-Supervised Gross Target Volume of Nasopharyngeal Carcinoma Segmentation via Uncertainty Rectified Pyramid Consistency Code
EllipseNet: Anchor-Free Ellipse Detection for Automatic Cardiac Biometrics in Fetal Echocardiography Code
EMA: Auditing Data Removal from Trained Models Code
EMDQ-SLAM: Real-time High-resolution Reconstruction of Soft Tissue Surface from Stereo Laparoscopy Videos Code
End-to-end Ultrasound Frame to Volume Registration Code
Equivariant Filters for Efficient Tracking in 3D Imaging Code
Explaining COVID-19 and Thoracic Pathology Model Predictions by Identifying Informative Input Features Code
Exploring the Functional Difference of Gyri/Sulci via Hierarchical Interpretable Autoencoder Code
Federated Semi-supervised Medical Image Classification via Inter-client Relation Matching Code
Federated Whole Prostate Segmentation in MRI with Personalized Neural Architectures Code
FedPerl: Semi-Supervised Peer Learning for Skin Lesion Classification Code
Few Trust Data Guided Annotation Refinement for Upper Gastrointestinal Anatomy Recognition Code
Few-Shot Domain Adaptation with Polymorphic Transformers Code
Fighting Class Imbalance with Contrastive Learning Code
FoldIt: Haustral Folds Detection and Segmentation in Colonoscopy Videos Code
From Brain to Body: Learning Low-Frequency Respiration and Cardiac Signals from fMRI Dynamics Code
Functional Magnetic Resonance Imaging data augmentation through conditional ICA Code
Generalised Super Resolution for Quantitative MRI Using Self-Supervised Mixture of Experts Code
Generator Versus Segmentor: Pseudo-healthy Synthesis Code
Hierarchical graph pathomic network for progression free survival prediction Code
Hierarchical Phenotyping and Graph Modeling of Spatial Architecture in Lymphoid Neoplasms Code
High-particle simulation of Monte-Carlo dose distribution with 3D ConvLSTMs Code
High-resolution segmentation of lumbar vertebrae from conventional thick slice MRI Code
HRENet: A Hard Region Enhancement Network for Polyp Segmentation Code
hSDB-instrument: Instrument Localization Database for Laparoscopic and Robotic Surgeries Code
Hybrid graph convolutional neural networks for anatomical segmentation Code
Imbalance-Aware Self-Supervised Learning for 3D Radiomic Representations Code
Implicit field learning for unsupervised anomaly detection in medical images Code
Implicit Neural Distance Representation for Unsupervised and Supervised Classification of Complex Anatomies Code
Improved Brain Lesion Segmentation with Anatomical Priors from Healthy Subjects Code
Improving Generalizability in Limited-Angle CT Reconstruction with Sinogram Extrapolation Code
Improving the Explainability of Skin Cancer Diagnosis Using CBIR Code
InDuDoNet: An Interpretable Dual Domain Network for CT Metal Artifact Reduction Code
Instance-based Vision Transformer for Subtyping of Papillary Renal Cell Carcinoma in Histopathological Image Code
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation Code
Interactive smoothing parameter optimization in DBT Reconstruction using Deep learning Code
Interpretable gender classification from retinal fundus images using BagNets Code
Intra-operative Update of Boundary Conditions for Patient-specific Surgical Simulation Code
I-SECRET: Importance-guided fundus image enhancement via semi-supervised contrastive constraining Code
Joint Motion Correction and Super Resolution for Cardiac Segmentation via Latent Optimisation Code
Joint Optimization of Hadamard Sensing and Reconstruction in Compressed Sensing Fluorescence Microscopy Code
Label-Free Physics-Informed Image Sequence Reconstruction with Disentangled Spatial-Temporal Modeling Code
Labels-set Loss Functions for Partial Supervision: Application to Fetal Brain 3D MRI Parcellation Code
LambdaUNet: 2.5D Stroke Lesion Segmentation of Diffusion-weighted MR Images Code
Learnable Oriented-Derivative Network for Polyp Segmentation Code
Learning 4D Infant Cortical Surface Atlas with Unsupervised Spherical Networks Code
Learning to Address Intra-segment Misclassification in Retinal Imaging Code
Learning Unsupervised Parameter-specific Affine Transformation for Medical Images Registration Code
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs Code
Learning-based attenuation quantification in abdominal ultrasound Code
LensID: A CNN-RNN-Based Framework Towards Lens Irregularity Detection in Cataract Surgery Videos Code
Lesion-based Contrastive Learning for Diabetic Retinopathy Grading from Fundus Images Code
LG-Net: Lesion Gate Network for Multiple Sclerosis Lesion Inpainting Code
LIFE: A Generalizable Autodidactic Pipeline for 3D OCT-A Vessel Segmentation Code
Linear Prediction Residual for Efficient Diagnosis of Parkinson's Disease from Gait Code
Local Morphological Measures Confirm that Folding within Small Partitions of the Human Cortex Follows Universal Scaling Law Code
Longitudinal Correlation Analysis for Decoding Multi-Modal Brain Development Code
Longitudinal Quantitative Assessment of COVID-19 Infection Progression from Chest CTs Code
Longitudinal self-supervision to disentangle inter-patient variability from disease progression Code
LuMiRa: An Integrated Lung Deformation Atlas and 3D-CNN model of Infiltrates for COVID-19 Prognosis Code
MASC-Units: Training Oriented Filters for Segmenting Curvilinear Structures Code
MBFF-Net: Multi-Branch Feature Fusion Network for Carotid Plaque Segmentation in Ultrasound Code
Medical Transformer: Gated Axial-Attention for Medical Image Segmentation Code
Memory-efficient Learning for High-dimensional MRI Reconstruction Code
MIL-VT: Multiple Instance Learning Enhanced Vision Transformer for Fundus Image Classification Code
Modality Completion via Gaussian Process Prior Variational Autoencoders for Multi-Modal Glioma Segmentation Code
Modality-aware Mutual Learning for Multi-modal Medical Image Segmentation Code
MorphSet: Improving Renal Histopathology Case Assessment Through Learned Prognostic Vectors Code
MouseGAN: GAN-Based Multiple MRI Modalities Synthesis and Segmentation for Mouse Brain Structures Code
M-SEAM-NAM: Multi-instance Self-supervised Equivalent Attention Mechanism with Neighborhood Affinity Module for Double Weakly Supervised Segmentation of COVID-19 Code
MT-UDA: Towards Unsupervised Cross-Modality Medical Image Segmentation with Limited Source Labels Code
Multi-Compound Transformer for Accurate Biomedical Image Segmentation Code
Multi-Contrast MRI Super-Resolution via a Multi-Stage Integration Network Code
Multi-frame Attention Network for Left Ventricle Segmentation in 3D Echocardiography Code
Multi-frame Collaboration for Effective Endoscopic Video Polyp Detection via Spatial-Temporal Feature Transformation Code
Multi-modal Multi-instance Learning using Weakly Correlated Histopathological Images and Tabular Clinical Information Code
Multiple Instance Learning with Auxiliary Task Weighting for Multiple Myeloma Classification Code
Multiple Meta-model Quantifying for Medical Visual Question Answering Code
Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy Code
Multi-view analysis of unregistered medical images using cross-view transformers Code
Neighbor Matching for Semi-supervised Learning Code
nnDetection: A Self-configuring Method for Medical Object Detection Code
Noisy Labels are Treasure: Mean-Teacher-Assisted Confident Learning for Hepatic Vessel Segmentation Code
Non-parametric vignetting correction for sparse spatial transcriptomics images Code
Nuclei Grading of Clear Cell Renal Cell Carcinoma in Histopathological Image by Composite High-Resolution Network Code
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale Code
Observational Supervision for Medical Image Classification using Gaze Data Code
OLVA: Optimal Latent Vector Alignment for Unsupervised Domain Adaptation in Medical Image Segmentation Code
On the relationship between calibrated predictors and unbiased volume estimation Code
One-Shot Medical Landmark Detection Code
OperA: Attention-Regularized Transformers for Surgical Phase Recognition Code
Orthogonal Ensemble Networks for Biomedical Image Segmentation Code
Over-and-Under Complete Convolutional RNN for MRI Reconstruction Code
OXnet: Deep Omni-supervised Thoracic Disease Detection from Chest X-rays Code
PAC Bayesian Performance Guarantees for (Stochastic) Deep Networks in Medical Imaging Code
Patch-Free 3D Medical Image Segmentation Driven by Super-Resolution Technique and Self-Supervised Guidance Code
Patient-specific virtual spine straightening and vertebra inpainting: An automatic framework for osteoplasty planning Code
Perceptual Quality Assessment of Chest Radiograph Code
Personalized Retrogress-Resilient Framework for Real-World Medical Federated Learning Code
Phase-independent Latent Representation for Cardiac Shape Analysis Code
Point-Unet: A Context-aware Point-based Neural Network for Volumetric Segmentation Code
Positional Contrastive Learning for Volumetric Medical Image Segmentation Code
Progressively Normalized Self-Attention Network for Video Polyp Segmentation Code
Projection-wise Disentangling for Fair and Interpretable Representation Learning: Application to 3D Facial Shape Analysis Code
Prototypical Interaction Graph for Unsupervised Domain Adaptation in Surgical Instrument Segmentation Code
Q-space Conditioned Translation Networks for Directional Synthesis of Diffusion Weighted Images from Multi-modal Structural MRI Code
Quality-Aware Memory Network for Interactive Volumetric Image Segmentation Code
Quantifying structural connectivity in brain tumor patients Code
Quantitative Assessments for Ultrasound Probe Calibration Code
Rapid treatment planning for low-dose-rate prostate brachytherapy with TP-GAN Code
RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting Code
Reciprocal Learning for Semi-supervised Segmentation Code
Recurrent Multigraph Integrator Network for Predicting the Evolution of Population-Driven Brain Connectivity Templates Code
Refined Local-imbalance-based Weight for Airway Segmentation in CT Code
ReSGAN: Intracranial Hemorrhage Segmentation with Residuals of Synthetic Brain CT Scans Code
Residual Feedback Network for Breast Lesion Segmentation in Ultrasound Image Code
Rethinking Ultrasound Augmentation: A Physics-Inspired Approach Code
Revisiting iterative highly efficient optimisation schemes in medical image registration Code
RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT Scans Code
Rician noise estimation for 3D Magnetic Resonance Images based on Benford's Law Code
RLP-Net: Recursive Light Propagation Network for 3-D Virtual Refocusing Code
RV-GAN: Segmenting Retinal Vascular Structure in Fundus Photographs using a Novel Multi-scale Generative Adversarial Network Code
Scalable, Axiomatic Explanations of Deep Alzheimer's Diagnosis from Heterogeneous Data Code
Selective Learning from External Data for CT Image Segmentation Code
Self-Supervised Correction Learning for Semi-Supervised Biomedical Image Segmentation Code
Self-Supervised Learning for MRI Reconstruction with a Parallel Network Training Framework Code
Self-supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging Code
Self-Supervised Longitudinal Neighbourhood Embedding Code
Self-Supervised Multi-Modal Alignment For Whole Body Medical Imaging Code
Self-Supervised Vessel Enhancement Using Flow-Based Consistencies Code
Self-supervised visual representation learning for histopathological images Code
Semi-supervised Cell Detection in Time-lapse Images Using Temporal Consistency Code
Semi-supervised Contrastive Learning for Label-efficient Medical Image Segmentation Code
Semi-supervised Meta-learning with Disentanglement for Domain-generalised Medical Image Segmentation Code
Semi-Supervised Unpaired Multi-Modal Learning for Label-Efficient Medical Image Segmentation Code
Sequential Gaussian Process Regression for Simultaneous Pathology Detection and Shape Reconstruction Code
Sequential Lung Nodule Synthesis using Attribute-guided Generative Adversarial Networks Code
Shallow Attention Network for Polyp Segmentation Code
Sharpening Local Interpretable Model-agnostic Explanations for Histopathology: Improved Understandability and Reliability Code
SimTriplet: Simple Triplet Representation Learning with a Single GPU Code
Simultaneous Alignment and Surface Regression Using Hybrid 2D-3D Networks for 3D Coherent Layer Segmentation of Retina OCT Images Code
Sli2Vol: Annotate a 3D Volume from a Single Slice with Self-Supervised Learning Code
Source-Free Domain Adaptive Fundus Image Segmentation with Denoised Pseudo-Labeling Code
Spine-Transformers: Vertebra Detection and Localization in Arbitrary Field-of-View Spine CT with Transformers Code
STRESS: Super-Resolution for Dynamic Fetal MRI using Self-Supervised Learning Code
Structure-Preserving Multi-Domain Stain Color Augmentation using Style-Transfer with Disentangled Representations Code
Study Group Learning: Improving Retinal Vessel Segmentation Trained with Noisy Labels Code
Superpixel-guided Iterative Learning from Noisy Labels for Medical Image Segmentation Code
SurgeonAssist-Net: Towards Context-Aware Head-Mounted Display-Based Augmented Reality for Surgical Guidance Code
Surgical Instruction Generation with Transformers Code
Surgical Workflow Anticipation using Instrument Interaction Code
Survival Prediction Based on Histopathology Imaging and Clinical Data: A Novel, Whole Slide CNN Approach Code
Synthesizing Multi-Tracer PET Images for Alzheimer's Disease Patients using a 3D Unified Anatomy-aware Cyclic Adversarial Network Code
TarGAN: Target-Aware Generative Adversarial Networks for Multi-modality Medical Image Translation Code
Task Transformer Network for Joint MRI Reconstruction and Super-Resolution Code
Task-Oriented Low-Dose CT Image Denoising Code
TEDS-Net: Enforcing Diffeomorphisms in Spatial Transformers to Guarantee Topology Preservation in Segmentations Code
Text2Brain: Synthesis of Brain Activation Maps from Free-form Text Query Code
Topological Learning and Its Application to Multimodal Brain Network Integration Code
Towards Robust General Medical Image Segmentation Code
Towards Semantic Interpretation of Thoracic Disease and COVID-19 Diagnosis Models Code
Training Automatic View Planner for Cardiac MR Imaging via Self-Supervision by Spatial Relationship between Views Code
TransBTS: Multimodal Brain Tumor Segmentation Using Transformer Code
TransCT: Dual-path Transformer for Low Dose Computed Tomography Code
Transfer Learning of Deep Spatiotemporal Networks to Model Arbitrarily Long Videos of Seizures Code
Transformer Network for Significant Stenosis Detection in CCTA of Coronary Arteries Code
TransFuse: Fusing Transformers and CNNs for Medical Image Segmentation Code
Trans-SVNet: Accurate Phase Recognition from Surgical Videos via Hybrid Embedding Aggregation Transformer Code
Tripled-uncertainty Guided Mean Teacher model for Semi-supervised Medical Image Segmentation Code
TumorCP: A Simple but Effective Object-Level Data Augmentation for Tumor Segmentation Code
TUN-Det: A Novel Network for Thyroid Ultrasound Nodule Detection Code
Ultrasound Video Transformers for Cardiac Ejection Fraction Estimation Code
Uncertainty-Aware Label Rectification for Domain Adaptive Mitochondria Segmentation Code
Uncertainty-Guided Progressive GANs for Medical Image Translation Code
Unsupervised Diffeomorphic Surface Registration and Non-Linear Modelling Code
Unsupervised Network Learning for Cell Segmentation Code
Unsupervised Representation Learning Meets Pseudo-Label Supervised Self-Distillation: A New Approach to Rare Disease Classification Code
USCL: Pretraining Deep Ultrasound Image Diagnosis Model through Video Contrastive Representation Learning Code
Variational Topic Inference for Chest X-Ray Report Generation Code
VinDr-SpineXR: A deep learning framework for spinal lesions detection and classification from radiographs Code
Visual-Assisted Probe Movement Guidance for Obstetric Ultrasound Scanning using Landmark Retrieval Code
Whole Heart Mesh Generation For Image-Based Computational Simulations By Learning Free-From Deformations Code
Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks Code
You Only Learn Once: Universal Anatomical Landmark Detection Code

This list is generated using code from https://github.com/GJiananChen/MICCAI2021-OpenReviewAnalysis.

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