-m

[fengsulan814]

CoverM genome -d db/ -1 reads/_1.fastq -2 reads/_2.fastq -m tpm rpkm mean -t 20 > coverm.tsv
It has been running for a long time, but I forgot to output relative_abundance. How can I output relative_abundance without rerunning the command to save time?

[wwood]

Hi, Afraid there's not much you can do. If you had output bam files, that would have made things faster, but it seems you did not from that command line. ben -\------------- Ben Woodcroft Group leader, Centre for Microbiome Research, QUT

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________________________________ From: fengsulan814 ***@***.***> Sent: Monday, December 29, 2025 4:07:57 PM To: wwood/CoverM ***@***.***> Cc: Subscribed ***@***.***> Subject: [wwood/CoverM] -m (Issue #283) [https://avatars.githubusercontent.com/u/173142691?s=20&v=4]fengsulan814 created an issue (wwood/CoverM#283)<#283> CoverM genome -d db/ -1 reads/_1.fastq -2 reads/_2.fastq -m tpm rpkm mean -t 20 > coverm.tsv It has been running for a long time, but I forgot to output relative_abundance. How can I output relative_abundance without rerunning the command to save time? ― Reply to this email directly, view it on GitHub<#283>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAADX5ETDYLH5UP6M6PVD6L4EDAL3AVCNFSM6AAAAACQGVSHW2VHI2DSMVQWIX3LMV43ASLTON2WKOZTG43DMNJQG42DQNQ>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>