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Merge remote-tracking branch 'origin/codex/fix-bam-file-handling-for-… Test CoverM with Pixi #256: Commit 2b82bcd pushed by wwood
2m 1s xmapper
xmapper
2m 1s
tests: Fix, I think. Test CoverM with Pixi #255: Commit 3c6eba3 pushed by wwood
1m 50s xmapper
xmapper
1m 50s
Ensure concatenated reference FASTA temp file has .fasta suffix Test CoverM with Pixi #254: Pull request #281 synchronize by wwood
2m 21s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
2m 21s
Add x-mapper genome CLI test using genome-fasta-files Test CoverM with Pixi #253: Commit d201538 pushed by wwood
2m 1s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
2m 1s
Ensure concatenated reference FASTA temp file has .fasta suffix Test CoverM with Pixi #252: Pull request #281 opened by wwood
3m 10s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
3m 10s
Ensure concatenated reference FASTA has extension Test CoverM with Pixi #251: Commit c9273da pushed by wwood
2m 3s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
2m 3s
test: Fix x-mapper one. Test CoverM with Pixi #250: Commit 7a641b2 pushed by wwood
2m 33s codex/fix-bam-file-handling-for-.fasta-extension
codex/fix-bam-file-handling-for-.fasta-extension
2m 33s
Add dependency checks for x-mapper mapping program Test CoverM with Pixi #249: Commit d7fb2df pushed by wwood
2m 25s codex/add-external_command_checker-for-x-mapper
codex/add-external_command_checker-for-x-mapper
2m 25s
pixi: update it. Test CoverM with Pixi #248: Commit 16a6003 pushed by wwood
2m 32s codex/add-external_command_checker-for-x-mapper
codex/add-external_command_checker-for-x-mapper
2m 32s
test: Fix x-mapper one. Test CoverM with Pixi #247: Commit 7a641b2 pushed by wwood
2m 13s xmapper
xmapper
2m 13s
pixi: update it. Test CoverM with Pixi #246: Commit 16a6003 pushed by wwood
1m 58s xmapper
xmapper
1m 58s
x-mapper: Log correctly. Test CoverM with Pixi #245: Commit bbb430c pushed by wwood
2m 24s xmapper
xmapper
2m 24s
test: Add already passing test for filtering. Test CoverM with Pixi #244: Commit 2d2ae86 pushed by wwood
2m 38s xmapper
xmapper
2m 38s
Add x-mapper support Test CoverM with Pixi #243: Pull request #272 synchronize by wwood
1m 55s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
1m 55s
Add X-Mapper contig test for min identity Test CoverM with Pixi #242: Commit 7d38c12 pushed by wwood
2m 6s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 6s
Add x-mapper support Test CoverM with Pixi #241: Pull request #272 synchronize by wwood
2m 23s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 23s
Add x-mapper coverage tests and fix NM tagging Test CoverM with Pixi #240: Commit 6d5da7b pushed by wwood
2m 28s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 28s
Add x-mapper support Test CoverM with Pixi #239: Pull request #272 synchronize by wwood
1m 51s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
1m 51s
Update X-Mapper integration Test CoverM with Pixi #238: Commit d10dcd5 pushed by wwood
2m 29s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 29s
Add x-mapper support Test CoverM with Pixi #237: Pull request #272 synchronize by wwood
2m 17s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 17s
Mark X-Mapper make test with feature Test CoverM with Pixi #236: Commit 53d63b9 pushed by wwood
2m 32s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 32s
Add x-mapper support Test CoverM with Pixi #235: Pull request #272 opened by wwood
3m 14s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
3m 14s
Add integration tests for x-mapper Test CoverM with Pixi #234: Commit ce10e8b pushed by wwood
2m 52s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 52s
Add option to name cached BAM outputs, rename --bam-file-cache-direct… Test CoverM with Pixi #233: Commit c91a9b9 pushed by wwood
2m 36s codex/add-support-for-x-mapper-and-tests
codex/add-support-for-x-mapper-and-tests
2m 36s
Add GC-bias analysis notebook for Mycoplasma genitalium Test CoverM with Pixi #232: Pull request #268 synchronize by wwood
1m 47s codex/test-gc-bias-mode-with-real-data
codex/test-gc-bias-mode-with-real-data
1m 47s