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biocthis Public
Forked from lcolladotor/biocthisAutomate package and project setup for Bioconductor packages
R UpdatedNov 7, 2024 -
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single-cell-tools Public
tools for pseudotime by cluster centroids and dimension reduciton
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ARMOR Public
Forked from csoneson/ARMORLight-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
Python MIT License UpdatedDec 16, 2022 -
numbat Public
Forked from kharchenkolab/numbatHaplotype-aware CNV analysis from scRNA-Seq
R Other UpdatedNov 9, 2022 -
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snakemake_template Public
Forked from nathanhaigh/snakemake_templateA small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.
Python MIT License UpdatedJul 5, 2022 -
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megadepth Public
Forked from LieberInstitute/megadepthR interface to megadepth: BigWig and BAM related utilities
R UpdatedNov 23, 2021 -
CopyscAT Public
Forked from spcdot/CopyscATInferring CNV data from single cell ATAC seq
R GNU General Public License v3.0 UpdatedOct 22, 2021 -
ocular_transcriptomes_pipeline Public
Forked from vinay-swamy/ocular_transcriptomes_pipelineA Snakemake pipeline for constructing de novo*transcriptomes from the EiaD dataset
R UpdatedSep 9, 2021 -
scenic_src Public
a portable repo for running the scenic protocol
Jupyter Notebook UpdatedJul 29, 2021 -
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PlotCNV Public
Forked from findlaycopley/PlotCNVAn R package to create a pretty Copy Number Variant plot from a segments file
R UpdatedMay 19, 2021 -
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infercnv Public
Forked from broadinstitute/infercnvInferring CNV from Single-Cell RNA-Seq
R Other UpdatedMay 5, 2021 -
InteractiveComplexHeatmap Public
Forked from jokergoo/InteractiveComplexHeatmapMake Interactive Complex Heatmaps
R Other UpdatedMar 12, 2021 -
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
R MIT License UpdatedMar 7, 2021 -
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usespandas Public
Forked from kevinushey/usespandasAn example R package, using Config/reticulate to ensure 'pandas' is installed on load.
R Other UpdatedFeb 19, 2021 -
BentoBox Public
Forked from PhanstielLab/plotgardenerR GNU General Public License v3.0 UpdatedJan 27, 2021