Releases: uclahs-cds/metapipeline-DNA
Releases · uclahs-cds/metapipeline-DNA
metapipeline-DNA v6.0.0
What's Changed
- Update dependabot to group common submodules by @nwiltsie in #218
- Pipeline version updates by @yashpatel6 in #220
- Release
v6.0.0
by @yashpatel6 in #221
Full Changelog: v6.0.0-rc.6...v6.0.0
metapipeline-DNA v6.0.0-rc.6
What's Changed
- Capture and consolidate detailed logs for each sample by @nwiltsie in #206
- CSV support by @yashpatel6 in #210
- Fix validation bug by @yashpatel6 in #213
- Add optional
status_email_address
parameter for child pipeline updates by @nwiltsie in #214 - Release 6.0.0-rc.6 by @yashpatel6 in #217
Full Changelog: v6.0.0-rc.5...v6.0.0-rc.6
metapipeline-DNA v6.0.0-rc.5
What's Changed
- Add call-SRC with support for multiple combinations by @yashpatel6 in #204
- Fix WGS submission by @yashpatel6 in #209
Full Changelog: v6.0.0-rc.4...v6.0.0-rc.5
metapipeline-DNA v6.0.0-rc.4
What's Changed
- Bugfixes with task hash and job limiter by @yashpatel6 in #201
Full Changelog: v6.0.0-rc.3...v6.0.0-rc.4
metapipeline-DNA v6.0.0-rc.3
What's Changed
- Status check fixes by @yashpatel6 in #185
- Add call-sCNA to
requested_pipelines
intemplate.config
by @tyamaguchi-ucla in #190 - Connect expanded intervals from targeted-coverage to downstream pipelines that accept intervals by @yashpatel6 in #184
- Update pipeline versions by @yashpatel6 in #191
- Add support for SRC inputs by @yashpatel6 in #192
- Split validation to allow for streamlined parameter input by @yashpatel6 in #194
- Upgrade to latest static analysis Action by @nwiltsie in #197
- Save sample/patient-specific metapipeline logs by @zhuchcn in #196
- Enable dependabot to keep submodules up-to-date by @nwiltsie in #195
- Release
v6.0.0-rc.3
by @yashpatel6 in #200
New Contributors
- @tyamaguchi-ucla made their first contribution in #190
Full Changelog: v6.0.0-rc.2...v6.0.0-rc.3
metapipeline-DNA v6.0.0-rc.2
What's Changed
- Update pipeline versions by @yashpatel6 in #172
- Add generate-SQC-BAM by @yashpatel6 in #174
- Graceful pipeline failure by @yashpatel6 in #175
- Generalize dependencies by @yashpatel6 in #177
- Fix bug with recalibrate-BAM by @yashpatel6 in #179
- Release
6.0.0-rc.2
by @yashpatel6 in #180
Full Changelog: v6.0.0-rc.1...v6.0.0-rc.2
metapipeline-DNA v6.0.0-rc.1
What's Changed
- Convert-BAM2FASTQ
2.0.0-rc.2
by @yashpatel6 in #160 - Align-DNA
10.0.0-rc.1
by @yashpatel6 in #161 - add pipeline-targeted-coverage by @alkaZeltser in #156
- Option to skip recalibrate-BAM by @yashpatel6 in #163
- Sanitize metadata passed to align-DNA by @yashpatel6 in #164
- rename targeted-coverage to calculate-targeted-coverage by @alkaZeltser in #165
- Add pipeline-call-sCNA
3.0.0
by @Faizal-Eeman in #159 - Save input files and logs by @yashpatel6 in #168
- Update testing sample for
v6.0.0-rc.1
by @yashpatel6 in #170
New Contributors
- @alkaZeltser made their first contribution in #156
Full Changelog: v5.3.1...v6.0.0-rc.1
metapipeline-DNA v5.3.1
What's Changed
- Pipeline ordering by @yashpatel6 in #152
- Sfitz update call sSNV to 8.0.0-rc.1 by @sorelfitzgibbon in #153
- Release
5.3.1
by @yashpatel6 in #155
New Contributors
- @sorelfitzgibbon made their first contribution in #153
Full Changelog: v5.2.1...v5.3.1
metapipeline-DNA v5.2.1
metapipeline-DNA v5.2.0
What's Changed
- Default alt-aware by @yashpatel6 in #148
- Delete unnecessary BAMs by @yashpatel6 in #147
Full Changelog: v5.1.0...v5.2.0