Save sample/patient-specific metapipeline logs

CHANGELOG.md

@@ -12,6 +12,7 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 + More descriptive error messages on failure to identify output files
 + Add call-sCNA to `requested_pipelines` in `template.config`
 + Handling for SRC inputs
++ Add nextflow logs sample/patient-specific metapiipeline. #187
 ### Changed
 + Use GitHub container registry CI/CD check
 + Calculate-targeted-coverage: `1.0.0-rc.2` -> `1.1.0`

config/metapipeline_DNA_base.config

@@ -3,3 +3,18 @@ process {
         ext.fail_gracefully = true
     }
 }
+
+trace {
+    enabled = true
+    file = "${params.metapipeline_log_output_dir}/nextflow-log/${params.patient}/trace.txt"
+}
+
+report {
+    enabled = true
+    file = "${params.metapipeline_log_output_dir}/nextflow-log/${params.patient}/report.html"
+}
+
+timeline {
+    enabled = true
+    file = "${params.metapipeline_log_output_dir}/nextflow-log/${params.patient}/timeline.html"
+}