List view

Efficient seeking to trees.

Status: Merged (completed).

tskit-dev/tskitnumber 2661

#2661 In tskit-dev/tskit;

· by molpopgen was closed on Apr 21, 2023

divmat tree by tree

Status: Merged (completed).

tskit-dev/tskitnumber 2736

#2736 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 11, 2023

Add asdict to Dataclass

Status: Merged (completed).

tskit-dev/tskitnumber 2759

#2759 In tskit-dev/tskit;

· by benjeffery was closed on Jul 11, 2023

Tests and documentation for genetic_relatedness_weighted

Status: Merged (completed).

tskit-dev/tskitnumber 2785

#2785 In tskit-dev/tskit;

· by brieuclehmann was closed on Jul 13, 2023

Modular incremental trees

Status: Merged (completed).

tskit-dev/tskitnumber 2786

#2786 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 18, 2023

Add flags_array and time_array to Tree class?

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#1322 In tskit-dev/tskit;

· by jeromekelleher was closed on Oct 5, 2022

Add samples and sites options to ts.genotype_matrix?

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#678 In tskit-dev/tskit;

· by hyanwong was closed on Sep 16, 2022

Add TreeSequence.max_time, min_time attributes

C APIIssue is about the C APIIssue is about the C API

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#2271 In tskit-dev/tskit;

· by jeromekelleher was closed on Nov 8, 2022

Create Pyodide package

enhancementNew feature or requestNew feature or request

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Closed (completed).

#2237 In tskit-dev/tskit;

· by benjeffery was closed on May 11, 2022

Don't return array-types for 1x1 statistics?

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#2308 In tskit-dev/tskit;

· by gtsambos was closed on Aug 4, 2022

Export examples section needed

documentationDocumentationDocumentation

Status: Closed (completed).

#2328 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 29, 2022

Display methods for Variant

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#2367 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 28, 2022

Remove <code>_node_edges</code> and <code> _tree_node_edges</code>

Python APIIssue is about the Python APIIssue is about the Python API

refactoringIssue is about refactoring existing codeIssue is about refactoring existing code

Status: Closed (completed).

#2359 In tskit-dev/tskit;

· by benjeffery was closed on Jul 6, 2022

Global state style for svg/html drawing methods

Python APIIssue is about the Python APIIssue is about the Python API

VisualisationThis issue addresses visualisationThis issue addresses visualisation

Status: Not planned (skipped).

#2362 In tskit-dev/tskit;

· by benjeffery was closed on Aug 16, 2022

Refactor all_edge_mutations path in drawing code

Python APIIssue is about the Python APIIssue is about the Python API

refactoringIssue is about refactoring existing codeIssue is about refactoring existing code

VisualisationThis issue addresses visualisationThis issue addresses visualisation

Status: Closed (completed).

#2360 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 6, 2022

#2235 missing from 0.5.0 changelog

documentationDocumentationDocumentation

Status: Closed (completed).

#2387 In tskit-dev/tskit;

· by benjeffery was closed on Aug 16, 2022

Referring to tables in TableCollection leaks memory

bugSomething isn't workingSomething isn't working

Python APIIssue is about the Python APIIssue is about the Python API

Status: Closed (completed).

#2428 In tskit-dev/tskit;

· by jeromekelleher was closed on Jul 27, 2022

Drop support for python 3.7

Status: Closed (completed).

#2597 In tskit-dev/tskit;

· by jeromekelleher was closed on Oct 9, 2023

Implement Tree.seek_index using C code

Status: Closed (completed).

#2696 In tskit-dev/tskit;

· by jeromekelleher was closed on Apr 21, 2023

Codecov 404ing

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Closed (completed).

#2680 In tskit-dev/tskit;

· by benjeffery was closed on Jul 7, 2023

Performance statistics report

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Status: Closed (completed).

#2444 In tskit-dev/tskit;

· by jeromekelleher was closed on Aug 4, 2022

Add span_normalise to divergence_matrix

Status: Closed (completed).

#2818 In tskit-dev/tskit;

· by jeromekelleher was closed on Aug 16, 2023

Jsonschema &gt;4.18.6 incompatibility

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2840 In tskit-dev/tskit;

· by alxsimon was closed on Oct 4, 2023

Release infrastructure update

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Closed (completed).

#2835 In tskit-dev/tskit;

· by jeromekelleher was closed on Oct 9, 2023

New divergence_matrix function doesn't support string windows specifications

bugSomething isn't workingSomething isn't working

Status: Closed (completed).

#2791 In tskit-dev/tskit;

· by jeromekelleher was closed on Aug 16, 2023