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decoding struct metadata does not check for proper length

Status: Open.

#3254 In tskit-dev/tskit;

· petrelharp opened on Aug 12, 2025

Currently <code>tables.sort()</code> does not always sort mutations into the required order

bugSomething isn't workingSomething isn't working

Status: Open.

#3253 In tskit-dev/tskit;

· hyanwong opened on Aug 11, 2025

· 

Python 0.6.5

Writing a RateMap to text (hapmap)

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#3252 In tskit-dev/tskit;

· nspope opened on Aug 7, 2025

Finalise API for "skipping" on Tree.seek()

Status: Open.

#3251 In tskit-dev/tskit;

· jeromekelleher opened on Aug 7, 2025

· 

Python 0.6.5

<code>set_columns</code> recodes metadata schema

Status: Open.

#3249 In tskit-dev/tskit;

· petrelharp opened on Aug 7, 2025

Rename TreePosition (and C structs) to TreeIndexes

Status: Open.

#3245 In tskit-dev/tskit;

· jeromekelleher opened on Aug 4, 2025

Span normalise argument to 'TreeSequence.genetic_relatedness_vector` does nothing

bugSomething isn't workingSomething isn't working

Status: Open.

#3241 In tskit-dev/tskit;

· nspope opened on Jul 17, 2025

be able to construct

Status: Open.

#3238 In tskit-dev/tskit;

· petrelharp opened on Jul 2, 2025

Warning on running setup.py

Status: Open.

Bug

#3233 In tskit-dev/tskit;

· jeromekelleher opened on Jun 25, 2025

Documentation and tests for LD matrix output dimensions

Status: Open.

#3229 In tskit-dev/tskit;

· apragsdale opened on Jun 19, 2025

Perform check for mutation parent integrity while checking tree integrity

C APIIssue is about the C APIIssue is about the C API

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Status: Open.

#3218 In tskit-dev/tskit;

· jeromekelleher opened on Jun 13, 2025

add method to transform coordinates by a RateMap

Status: Open.

#3213 In tskit-dev/tskit;

· petrelharp opened on Jun 11, 2025