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Clarify which version of Fst we compute

documentationDocumentationDocumentation

statistics

Status: Open.

#858 In tskit-dev/tskit;

· jeromekelleher opened on Sep 23, 2020

Update tracked_samples to natively use numpy array.

PerformanceThis issue addresses performance, either runtime or memoryThis issue addresses performance, either runtime or memory

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#64 In tskit-dev/tskit;

· jeromekelleher opened on Feb 2, 2018

Add action that tests against older versions of msprime etc?

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Status: Open.

#1069 In tskit-dev/tskit;

· jeromekelleher opened on Dec 1, 2020

SVG output needs to be compatible with "dark mode", e.g. in docs

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

VisualisationThis issue addresses visualisationThis issue addresses visualisation

Status: Open.

#1150 In tskit-dev/tskit;

· hyanwong opened on Jan 27, 2021

add individual statistics (eg heterozygosity)

enhancementNew feature or requestNew feature or request

statistics

Status: Open.

#166 In tskit-dev/tskit;

· petrelharp opened on Apr 1, 2019

specify samples by population name

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#1697 In tskit-dev/tskit;

· petrelharp opened on Sep 13, 2021

Refactor tests to use example tree sequences and parametrize

Infrastructure and toolsDevelopment infrastructure and toolsDevelopment infrastructure and tools

Python APIIssue is about the Python APIIssue is about the Python API

refactoringIssue is about refactoring existing codeIssue is about refactoring existing code

Status: Open.

#1804 In tskit-dev/tskit;

· jeromekelleher opened on Oct 17, 2021

Support missing data in alignments

bugSomething isn't workingSomething isn't working

Status: Open.

#1896 In tskit-dev/tskit;

· jeromekelleher opened on Nov 8, 2021

Add short citation hint to notebook display of tree sequence

documentationDocumentationDocumentation

enhancementNew feature or requestNew feature or request

Python APIIssue is about the Python APIIssue is about the Python API

Status: Open.

#2183 In tskit-dev/tskit;

· benjeffery opened on Apr 6, 2022