Analysis pipelines for genomic sequencing data

Workflow to construct linear representation of pan genome from deep WGS data and public assemblies

Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS

Various scripts for efficient processing of 10k Salmonella genomes

Trim, Align to genome, Deduplicate, Realign WGS sequencing samples

A prototype tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.

A pipeline utilizing PCA on 1000 genomes and WGS data from your own samples to determine or validate ancestry of an individual.

Scripts used on a cluster that demonstrate vcf file manipulation and preparation.

Single point and rare variant analysis for the SCALLOP-Seq analysis

Variant calling of WGS datasets

Toolbox for work with CloneHD application

This shell script is for analysing the DNA copy number via WGS data

GATK WGS workflow

A combination of optical genome mapping with Bionano and whole genome sequencing short-read data. This pipeline was created to help integrate structural variant calling from these two technologies.

Analysis of WGS data in C. elegans

Determination Of Divergence Times between sub populations. Used Data of WGS for prepare all the workflow.

Workflow for biological validation of germline SNP and indel variant datasets.

Single Nucleotide Variant Filtering