EnteroMark: A species-optimized computational pipeline for rapid, accessible Enterococcus faecium genotyping and surveillance .Complete VRE genomic analysis in minutes — not hours
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Sep 6, 2026 - Python
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virulence
Here are 7 public repositories matching this topic...
A Tailored Computational Workflow Enabling Rapid, User-Friendly Genotyping and Epidemiological Surveillance of the Enterobacter cloacae Complex
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Sep 20, 2026 - Python
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
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Nov 1, 2021 - Python
AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.
python bash bioinformatics pipeline genomics reproducible-research conda virulence abricate staphylococcus bacterial-genomics bakta amrfinderplus invasome vfdb
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May 27, 2026 - Python
Docker-based implementation of the Discover1.1 pipeline for bacterial characterization.
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Nov 1, 2021 - Python
Bacterial swiss-army-knife pipeline for NGS data
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Sep 3, 2026 - Python
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