A standalone and free application to explore genetics variations from VCF file

Classes and functions for use with bioinformatics.

A utility to merge a large number of VCF files incrementally

A Haskell script that performs basic parsing on the default output of ensembl-vep and variant-calling format (vcf) files.

Your VCF converted to XLS from now. VCF stands for Variant Call Format and it is used by bioinformatics projects to encode structural genetic variants.

High-throughput Tabular Data Processor (HTDP)

Convert an standard VCF to JSON format

SAMtools and BCFtools (v1.10) for manipulating next-generation sequencing data, from bioconda

A WDL-based workflow for extraction of variants and their associated info from large VCF files

Converts XLSX documents into VCF (Variant Call Format) - remastered for JDK1.8 2023

Variant Calling with Deep Learning for Prokaryotic genomes using TensorFlow. Adds (0 <= P(Variant) <= 1) to VCF files under INFO as abbreviated "ACC=".

A Haskell script for selecting variants from a variant calling format (vcf) file based on variants present in a mgibed file.

Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

A simple python implementation of Variant Call Format intersection and complements for identifying genetic mutations

Predicting true low-VAF SNVs in HPV using triplicate NGS samples and machine learning

This script analyzes variant call format (VCF) files to identify genetic variants shared across multiple samples. Given a list of VCF paths, it reports variants present in ≥10-100% of samples (10% increments), showing chromosome, position, alleles, sample count, and percentage. Processes genotype data to ensure accurate variant presence detection