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iqbal-lab-org

Iqbal Lab at EMBL-EBI

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  1. pandora pandora Public

    Pan-genome inference and genotyping with long noisy or short accurate reads

    C++ 117 15

  2. gramtools gramtools Public

    Genome inference from a population reference graph

    C++ 96 15

  3. pling pling Public

    Plasmid analysis using rearrangement distances

    JavaScript 42 1

  4. clockwork clockwork Public

    CRyPTIC data processing pipelines

    HTML 34 22

  5. make_prg make_prg Public

    Code to create a PRG from a Multiple Sequence Alignment file

    Python 25 7

  6. viridian viridian Public

    Python 21 6

Repositories

Showing 10 of 47 repositories
  • varifier Public

    Variant call verification

    iqbal-lab-org/varifier’s past year of commit activity
    Python 16 MIT 3 7 0 Updated May 12, 2025
  • viridian_simulations_workflow Public

    Workflow to simulate SARS-CoV-2 amplicons and reads.

    iqbal-lab-org/viridian_simulations_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 8, 2025
  • gramtools Public

    Genome inference from a population reference graph

    iqbal-lab-org/gramtools’s past year of commit activity
    C++ 96 MIT 15 14 (1 issue needs help) 0 Updated Apr 1, 2025
  • viridian Public
    iqbal-lab-org/viridian’s past year of commit activity
    Python 21 MIT 6 28 0 Updated Mar 6, 2025
  • cylon Public

    Virus assembler from amplicon sequencing reads

    iqbal-lab-org/cylon’s past year of commit activity
    Python 5 MIT 1 1 0 Updated Mar 6, 2025
  • pandora Public

    Pan-genome inference and genotyping with long noisy or short accurate reads

    iqbal-lab-org/pandora’s past year of commit activity
    C++ 117 MIT 15 75 0 Updated Dec 13, 2024
  • cobs Public Forked from bingmann/cobs

    COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

    iqbal-lab-org/cobs’s past year of commit activity
    C++ 20 MIT 15 6 1 Updated Nov 24, 2024
  • pling Public

    Plasmid analysis using rearrangement distances

    iqbal-lab-org/pling’s past year of commit activity
    JavaScript 42 MIT 1 6 0 Updated Nov 13, 2024
  • clockwork Public

    CRyPTIC data processing pipelines

    iqbal-lab-org/clockwork’s past year of commit activity
    HTML 34 MIT 22 21 5 Updated Jul 18, 2024
  • ivcfmerge Public

    A utility to merge a large number of VCF files incrementally

    iqbal-lab-org/ivcfmerge’s past year of commit activity
    Python 3 0 1 1 Updated Jul 9, 2024
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