ChIP-seq analysis notes from Ming Tang
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Aug 5, 2024 - Python
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transcription-factor-binding
Here are 13 public repositories matching this topic...
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
transcription-factors deep-learning transformers gene-expression artificial-intelligence transcription-factor-binding attention-mechanism
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Jun 2, 2022 - Python
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
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Mar 19, 2026 - Python
A multimodal model predicting chromatin-associated proteins binding on the human genome.
deep-learning genomics computational-biology transformer transcription-factor-binding multimodal-learning
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May 5, 2026 - Python
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
python bioinformatics transcription-factors motif dna genetic-programming chip-seq regular-expressions strongly-typed transcription-factor-binding pareto-front dna-sequences sequences nsga-ii multiobjective-optimization network-expressions motif-discovery deap jaspar
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Jul 24, 2018 - Python
Artificial neural network to predict transcription factor binding.
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Jul 2, 2018 - Python
Implementation of BPNet, a base-resolution convolutional neural network for transcription-factor binding prediction, in PyTorch.
bioinformatics deep-learning biology computational-biology transcription-factor-binding reproduction reproduction-code
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May 7, 2023 - Python
Transcription Factor (TF) binding preference prediction using deep neural networks.
pytorch convolutional-neural-networks transcription-factor-binding dna-sequences pfm sequence-logo binding-prediction doublet-shuffle
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Jan 15, 2024 - Python
Simple Python parser for MotEvo.
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May 25, 2021 - Python
Which ESR1 and PGR binding sites are functional?
tad transcription-factor-binding bed-files chipseq transcription-factor-binding-site progesterrone tf-binding-motif chipseq-region estrogen progesterone-resceptor estrogen-receptor hand2 transcription-control
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Dec 11, 2018 - Python
BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.
visualization transcription-factors regulation chip-seq transcription-factor-binding sequence-analysis chromatin-immunoprecipitation motif-prediction
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Mar 9, 2019 - Python
A simple genetic algorithm for finding consensus binding sties in DNA sequences in Drosophila
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May 1, 2020 - Python
Pipeline for integration different models of transcription factor binding sites
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Dec 9, 2024 - Python
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