Danko-Lab / rtfbs_db Star 22 Code Issues Pull requests Parse TF motifs from public databases, read into R, and scan using 'rtfbs'. transcription-factors r motif transcription-factor-binding enrichment-analysis tfbs-discovery cis-bp Updated Dec 12, 2018 R
wassermanlab / JASPAR-UCSC-tracks Star 13 Code Issues Pull requests Code and data used to create the JASPAR UCSC Genome Browser tracks data hub gene-regulation tfbs-discovery Updated Aug 12, 2022 Python
fanglab / BEAST Star 9 Code Issues Pull requests Bacterial Epigenomics Analysis SuiTe rna-seq methylation epigenetics hgt bacteria differential-expression unix-shell recombination tfbs-discovery smrt Updated May 4, 2020 R
wassermanlab / JASPAR-inference-tool Star 7 Code Issues Pull requests Code and data used by the JASPAR profile inference tool gene-regulation logistic-regression tfbs-discovery Updated Mar 13, 2024 Python
MyersGroup / MotifFinder Star 6 Code Issues Pull requests An R package for de novo discovery of enriched DNA motifs (e.g. TFBS) chip-seq r-package transcription-factor-binding motif-discovery tfbs-discovery tfbs finding-enriched-motifs Updated May 28, 2019 R
brlauuu / motevowrapper Star 1 Code Issues Pull requests Simple Python parser for MotEvo. motif transcription-factor-binding tfbs-discovery motevo Updated May 25, 2021 Python
petrokvitka / TFBScan Star 0 Code Issues Pull requests A tool to search for motifs within the whole genome or regions of interest motif motif-discovery tfbs-discovery tfbs Updated Feb 10, 2019 Python