spaced-seed

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ORI (Oxford nanopore Reads Identification) is a software allowing, from long nanopore reads, to identify the bacterial strains present in a sample.

subset and spaced seed design tool

An algorithm for finding SNPs of a long read compared to a reference genome

bioinformatics dna-sequences spaced-seed kmers

The GPU-version and MPI-version of PerM

gpu mpi alignment sequence-alignment read-mapping spaced-seed

DNA read mapping (seed-extension-aligner)

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