A Snakemake pipeline developed to quantify isoforms expression levels in large RNA-seq datasets and find poly-A sites
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Jul 4, 2024 - Python
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snakemake-pipelines
Here are 12 public repositories matching this topic...
A minimal Snakemake pipeline.
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Sep 2, 2019 - Python
STAR + edgeR/DESeq2/limma-voom + GSEA RNA-seq gene expression analysis workflow
bioinformatics
computational-biology
bioinformatics-pipeline
bioinformatics-analysis
snakemake-workflows
snakemake-pipelines
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Oct 30, 2024 - Python
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
bioinformatics
pipeline
genomics
assembly
ngs
r-markdown
microbiome
bash-script
antismash
bgc
snakemake-pipelines
nextflow-pipelines
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Sep 6, 2021 - Jupyter Notebook
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Jan 18, 2020 - Python
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Aug 9, 2022 - Python
A snakemake workflow for the OrthoEvol python package.
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Jul 16, 2019 - Python
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Jun 10, 2020 - Python
Statistical inference of recent positive selection using IBD segments
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Nov 19, 2024 - Jupyter Notebook
Bismark-MethylDackel DNA methylation quantification pipeline in snakemake.
bioinformatics
snakemake
pipeline
reproducible-research
methylation
reproducible-science
snakemake-pipelines
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Feb 7, 2022 - Python
Snakemake profile for running jobs on an LSF cluster
profile
bioinformatics
snakemake
cluster
lsf
bioinformatics-pipeline
snakemake-pipelines
cluster-profile
snakemake-profile
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Jul 29, 2024 - Python
Snakemake pipelines for nanopore sequencing data archiving and processing
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Feb 2, 2022 - Python
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