Simulate ARGs and genomic sequence data using population genetic models

A Framework for Coalescent Simulation in R

Statistical inference of recent positive selection using IBD segments

Laplace transformed coalescence time distributions

🌲 Utilities for coalescent simulation with ms

Coalescent-Aware Species Tree Length Estimation in Substitution-units

CoalQC:Quality assessment of genomic datasets for Coalescent inferences

A repository that presents the results of Fossilized Birth-Death Trees for five datasets of Chang et al. (2015)

binary tree generation algorithms

triploid SMC inference method

code accompanying the manuscript "Beta-coalescents when sample size is large"

ancient population genomics

code accompanying the manuscript "Gene genealogies in diploid populations evolving according to sweepstakes reproduction"

C code for computing exact expected branch length spectrum of a Lambda-coalescent, in particular Example 2.4 in Durrett and Schweinsberg (2005)