A easy and clear javascript solution of the smith-waterman algorithm.

Repository for the paper "Dotplots und Sequenzanalysen als Untersuchungsinstrumente für Überlieferungsgemeinschaften am Beispiel von Priameln"

Examples for SDAccel 2017.1+ on AWS F1 instances

AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.

Implementation of K-means that categorizes sequences into groups based on similarity score derived from Smith-Waterman algorithm.

Projects implemented for the purposes of the course Parallel Computer Architecture

Bilkent University CS 481 Bioinformatics Algorithms assignments

GPU-accelerated implementation of the Smith-Waterman algorithm (GPU101 PiA project)

Fuzzy finder using Smith-Waterman algorithm

This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.

A miRNA Binding Site Prediction Tool

Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.

Fast Smith-Waterman algorithm for Ruby

Bellman Equation, Needleman-Warsh, Smith-Waterman Algorithms test and written in Ruby

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Lectures and exercises for Genome Informatics course held on Faculty of Electrical Engineering, University of Belgrade

Global and Local Sequence Alignment

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

🔬🧬 Algoritmo de alinhamento Smith Waterman em Python

A C++ implementation of the Smith - Waterman algorithm. The system consists of 3 different implementations: the one is sequential, while the other two parallelize the execution in a coarse and a fine level respectively, with the use of multithreading.