local-alignment

Python implementation of Striped Smith-Waterman Algorithm

A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water

Needleman-Wunsch Algorithm for global alignment and local alignment

BioAlign is a self-contained, browser-based tool for Smith–Waterman local sequence alignment and interactive heatmap visualization. It supports DNA, RNA, protein, numeric, and ASCII sequences, with customizable scoring, themes, local storage, fullscreen mode, and PNG/FASTA export.

Smith-Waterman dynamic programming algorithm finding exact optimal local alignment motifs, homologous domains, and substrings across DNA and protein sequences.

Production-grade genpark-smith-waterman-local-aligner-skill skill for AI agents

Production-grade genpark-smith-waterman-local-aligner-skill skill for AI agents

Smith-Waterman dynamic programming algorithm finding exact optimal local alignment motifs, homologous domains, and substrings across DNA and protein sequences.

Rapid local alignment search by in silico PCR

Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.

Global and Local Sequence Alignment

Sequence alignment methods implementation

A compilation of all the programs in my bioinformatics course

transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.

An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.

💻 Project for the course of Algorithms for Bioinformtics

Local and Global Alignment API

MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.

Algoritmos para el alineamiento de secuencias de ADN