A bioinformatics tool written in Rust to find palindromic sequences in DNA

A Similarity-Guided Alignment Algorithm

Rust implementation of sequence alignment / Levenshtein distance by A* acceleration of the DP algorithm

Faster FASTA and FASTQ file processing command line tool - parsing, sorting, deduplication, transliteration, filter, and stats

Local alignment search with k-bounded matching statistics.

convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.

Space-efficient minimizer-based pangenome reference graph and haplotype mapping tool

Command-line interface for the kbo local aligner.

This is an experiment implementing a WebAssembly pairwise sequence alignment module in Rust 🦀.

Rust bindings for the Parasail C library

SIMD pairwise sequence alignment

A rust crate that automatically cleans up a gene alignment by trimming to ORF and identifying and/or removing problematic sequences.

A miniaturized reimplementation of NCBI BLAST algorithm

Extract NEXUS partition blocks from a collection of concatenated alignments

Intelligent biological sequence database reduction with content-addressed storage

Rust implementations of the Needleman-Wunsch global alignment algorithm and the Smith-Waterman local alignment algorithm

Remove adaptors from short-read bisulfite sequencing data (coded in rust)