COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators

A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results

MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

Ontology of algorithms for analyzing biological models, their parameters, and their outputs

PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Utilities for building standardized command-line interfaces for biosimulation software packages

tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Registry of containerized biosimulation tools that support a standard command-line interface

AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

SED-ML website

Python library to download and cache models from BioModels

Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations

Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations

Tutorials for BioSimulators

Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations

Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects

XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container