SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
nanopore
cancer
phase
immunity
hla-typing
pacbio-data
local-assembly
loh
haplotype
reads-binning
hla-sequence
loss-of-heterozygosity
genotype-frequency
allelic-imbalance
human-leukocyte-antigens
-
Updated
Sep 25, 2024 - C++