Skip to content
@deepomicslab

DeepOmics Lab

Focus on Bioinformatics Toolkits Development
README.md

Hi there 👋

Welcome to DeepomicsLab!

Popular repositories Loading

  1. SpecHLA SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

    C++ 50 12

  2. GCNFrame GCNFrame Public

    This is a python package for genomics study with a GCN framework.

    Python 43 8

  3. SpecImmune SpecImmune Public

    Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBi…

    F* 29

  4. DeepHost DeepHost Public

    This is the repository for DeepHost, a phage host prediction tool.

    Python 20

  5. LocalHGT LocalHGT Public

    Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.

    Python 17 1

  6. SpecHap SpecHap Public

    C++ 12 3

Repositories

Showing 10 of 69 repositories
  • INVAS Public
    deepomicslab/INVAS’s past year of commit activity
    Python 1 0 0 0 Updated Sep 22, 2025
  • MicrobialScope-WEB Public
    deepomicslab/MicrobialScope-WEB’s past year of commit activity
    JavaScript 0 0 0 0 Updated Sep 20, 2025
  • MicrobialScope-API Public
    deepomicslab/MicrobialScope-API’s past year of commit activity
    Python 0 0 0 0 Updated Sep 20, 2025
  • mrnadesign_api Public
    deepomicslab/mrnadesign_api’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 18, 2025
  • mrnadesign_web Public
    deepomicslab/mrnadesign_web’s past year of commit activity
    Vue 0 0 0 0 Updated Sep 18, 2025
  • SpecHLA Public

    SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

    deepomicslab/SpecHLA’s past year of commit activity
    C++ 50 MIT 12 7 0 Updated Sep 18, 2025
  • DeepTAPE-1.0 Public

    DeepTAPE is an advanced deep learning tool designed to provide reference diagnostics for SLE, leveraging pre-trained models and supporting custom training within its framework.

    deepomicslab/DeepTAPE-1.0’s past year of commit activity
    Python 0 0 0 1 Updated Sep 17, 2025
  • FR_Hierarchy_Gut Public
    deepomicslab/FR_Hierarchy_Gut’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 14, 2025
  • CoMBCR Public
    deepomicslab/CoMBCR’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 28, 2025
  • SpecImmune Public

    Accurate Typing of Diverse Immune-Related Gene Families from Long-Read Sequencing Data. It can handle HLA, KIR, IG, TCR, CYP gene families. It supports both WGS and amplicon data. It supports PacBio and Nanopore data.

    deepomicslab/SpecImmune’s past year of commit activity
    F* 29 MIT 0 2 0 Updated Aug 22, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…