A tour in the wonderland of math with python.

GREAD: Graph Neural Reaction-Diffusion Networks, ICML 2023

A free, open-source tool for modeling chemical reaction networks in Python

Open-source Python package for a wide range of tasks in modeling cardiac electrophysiology using finite-difference methods.

Neuroca, Inc's official public authorized repository for a physics grounded approach to modeling real time divergent / convergent intelligence. It contains works in the multi-objective real-time zero-shot learning and cross domain reasoning model. Lineage: AMN (Adaptive Modular Network)->FUM (Fully Unified Model)->VDM (Void Dynamics Model

Multi-Architecture Coupled Ensemble Physics-Informed Neural Networks (MACE-PINN) for solving coupled partial differential equations. Implements parallel subnetworks with Fourier embeddings and adaptive loss weighting for Gray-Scott and Ginzburg-Landau reaction-diffusion systems.

Five-point stencil Convolutional Neural Networks (FCNNs)

ABM of Physarum tranport networks

Simulation of population dynamics

2D reaction-diffusion spiral wave solver using pseudo-spectral methods.

Turing Pattern Xperiments: data assimilation algorithms for the reconstruction of pattern formations

Reaction diffusion in python with pygame

Reproducible EMIT simulation + paper + logged test suite + analysis script to regenerate figures.

Python project for a reaction-diffusion system

Using NEURON for reaction-diffusion modeling of extracellular dynamics (Newton et al 2018)

Code for my Independent Study course at Johns Hopkins University on Cellular Automata modeling.

Reaction-diffusion sims of Ca2+ signals in astrocytic branchlets at the nanoscale (Denizot et al 22)

Reaction-diffusion in the NEURON simulator (McDougal et al 2013)