PAthological QUpath Obsession - QuPath and Python conversations
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Aug 29, 2025 - Python
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qupath
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Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.
python opencv machine-learning gui javafx pytorch unet-image-segmentation qupath deep-java-library gel-electrophoresis gel-segmentation
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Jul 13, 2025 - Python
🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
machine-learning dicom medical-imaging atlas typer pydicom openslide digital-pathology whole-slide-imaging uv pydantic qupath nicegui marimo oe-python-template aignostics image-data-commons
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Dec 12, 2025 - Python
Converting GeoJSON annotations from QuPath to COCO style.
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Aug 27, 2023 - Python
Supplementary information associated with Besson et al. (2019) ECDP 2019
docker bio-formats omero ome-tiff digital-pathology proceedings whole-slide-imaging supplemental-materials qupath
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Jan 7, 2021 - Python
NePathTK (NephroPathology Toolkit): An end-to-end open-source pipeline for nephropathology integrated with QuPath
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Oct 27, 2025 - Python
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