A cross-platform proteomics data analysis suite
PDV: an integrative proteomics data viewer
Interpretation of proteomics identification results
Highly adaptable common interface for proteomics search and de novo engines
EzAAI - High Throughput Prokaryotic AAI Calculator
A project for exploring differentially active signaling paths related to proteomics datasets
Open source Java library for computational proteomics
📚 🔬 PIA - Protein Inference Algorithms
Graphical user interface for the ThermoRawFileParser
High quality in silico spectral library generation for data-independent acquisition proteomics
Graphical user interface for de novo sequencing of tandem mass spectra
BACNET is a Java based platform to develop website for multi-omics analysis
PepQuery: a targeted peptide search engine
Scoring functions to compare MS/MS spectra
Customized protein database construction
PTM Identification and Quantification Engine from DIA
DeltaMass: view and interrogate open proteomics search data
PTM-Invariant Peptide Identification. An open search tool.
PACOM (Proteomics Assay COMparator) is a Java stand alone tool for visualize and compare large proteomics datasets
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