The codebase of the OpenMS project

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

pLink is a software dedicated for the analysis of chemically cross-linked proteins or protein complexes using mass spectrometry.

Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to large spectral libraries at a high performance.

Deep Learning for Mass Spectra Quality Assessment

Visual exploration of multi-dimensional proteomics data

Searching for peptide candidates using sparse matrix + matrix/vector multiplication.

R package which wraps useful c++ functions for dealing with string representations of peptides

Combine DTASelect-filter files.

FASTA file processor is a CMake Project written in modern C++ and designed to take advantage of the new C++17 standard. It is designed to read and write FASTA files quickly and efficiently, and it can be used as a library or a stand-alone program. The project comes with a set of tests using the Catch2 framework.

Template repository for custom backends in MS Annika.