phylogenetic-analysis

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

A phylogenetically-aware framework for detecting evolutionary associations between binary traits

Tool for estimating the Felsenstein bootstrap support of phylogenetic trees

a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records

An in vivo PRA reveals intronic motifs that combinatorially regulate splicing in a tissue-biased manner.

Morphy releases are archived here. This project serves as the root folder for all of the source projects in Morphy.

FUSE-PhyloTree enables to identify sequence conservation modules and associate them with functional annotations through phylogenomic analysis.

Fast phylogenetic model fitting and hypothesis tests of codon-based models using a python+rust structure 🦀

Deep Learning techniques applied to Phylogenetic Analysis

Codon-aware phylogenetic pipeline with Snakemake

CLI toolkit for building distance-based proteomic virus phylogenies from protein or nucleotide inputs.

A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.

This is the StatLing Repository.

Dockerized bioinformatics pipeline for protein sequence analysis using BLASTP, Clustal Omega, phylogenetic tree generation, and automated report generation.

Continuation of development of FAAUTeC

Python, not my best suit. However, it's special for me for its simplicity. I mainly use it to solve CPs. Nevertheless, there are some uncommon Math skills I hope you can learn from here.

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