Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
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Updated
Oct 9, 2024 - Python
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pangenome-pipeline
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A toolkit for prokaryotic comparative genomics
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Updated
Nov 15, 2024 - Python
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics
annotation
clustering
biology
gene-families
bioinformatics-analysis
proteome-clustering
downstream-analysis
orthomcl
pangenome
singletons
plasmodium
duplicates-removal
gene-family
binary-matrix
accessory-genes
coregenome
pangenome-inference
pangenome-pipeline
count-matrix
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Updated
Feb 21, 2022 - Python
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