A couple of tools I find indispensable for post orthomcl down-stream analysis.
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Updated
Oct 2, 2019 - Perl
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orthomcl
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Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics
annotation
clustering
biology
gene-families
bioinformatics-analysis
proteome-clustering
downstream-analysis
orthomcl
pangenome
singletons
plasmodium
duplicates-removal
gene-family
binary-matrix
accessory-genes
coregenome
pangenome-inference
pangenome-pipeline
count-matrix
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Updated
Feb 21, 2022 - Python
Scripts for comparative genomic analysis at the genome architechture and gene content level
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Updated
Aug 8, 2018
We are taking existing orthoMcl Software Written Perl and Translating it to Python
python
perl
bioinformatics-pipeline
protein-sequences
bioinfomatics
genomic
genomic-data-analysis
orthomcl
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Updated
May 18, 2017 - Perl
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