pangenome-analysis

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applicativesystem / rust-metagenome-pangenome

a rust metagenome-pangenome analyzer

bioinformatics rust-lang metagenomes bioinformatics-analysis bioinformatics-databases pangenome metagenome-assembled-genomes pangenome-inference pangenome-analysis

Updated Nov 17, 2024
Rust

macyEpell / PAPER_Pell_NatureCommunications_2024

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This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.

variant-calling whole-genome-sequencing antibiotic-resistance virulence-genes streptococcus-agalactiae bacterial-genomics pangenome-analysis