Pangenome openness from k-mers or genes
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Sep 30, 2025 - C
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pangenome-analysis
Here are 5 public repositories matching this topic...
This repository contains the main codes used in the manuscript: "Oryza genome evolution through a tetraploid lens"
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Oct 6, 2025 - Shell
This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.
variant-calling whole-genome-sequencing antibiotic-resistance virulence-genes streptococcus-agalactiae bacterial-genomics pangenome-analysis
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Jul 24, 2025 - R
This tool provides a modular WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, genome assembly & profiling of the resistome, mobilome & virulome, as well as pangenome & MLST typing, BLASTn & phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis
docker microbial-genomics variant-calling cromwell modular-design wdl-workflow plasmids phylogenetic-analysis resistome virulome rmap mobilome pangenome-analysis mlst-typing eskapee
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Sep 5, 2025 - WDL
🧐Handbook for NGS data analysis
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Jan 9, 2025 - HTML
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