plasmids

A Go package for engineering organisms.

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

Plasmid and primer design software

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Software for prediction of plasmid sequences in metagenomic assemblies

Plascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.

QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

A lua package for designing DNA.

a DNA assembly library

Targeted Detection and Reconstruction of Plasmids

Plasmid Atlas - A web interface to browse for plasmids and their associated genes. Visit us at:

tyPPing and other methods for detecting phage-plasmids

Modular cloning simulation with the MoClo framework in Python

Software to identify plasmid sequence data from metagenome using logistic regression and Minhash

An ensemble of plasmid classification tools

repository-based plasmid design

A Python-based Circular Genome Visualization Tool

Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

A simple python plasmid map creator